PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116800.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 400aa MW: 44176.6 Da PI: 5.6207

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.7e-06	22	65	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r+C+ +++ + +C+ ++ lC C + H+ Ht++ XP_027116800.1 22 RVCDFCGDAAALVYCRADSAKLCLACDRQVHSTnplftkHTRCL 65 79****99*******************7689999999875 PP
2	zf-B_box	26.1	1.8e-08	66	109	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +++ ++++fC + ++ lC++C +H + H+++pl XP_027116800.1 66 LCDACDSTPATIFCSTHSSVLCQNCDWDTHTNssfsavHDRRPL 109 6*****************************88899999988775 PP
3	CCT	57.6	4.3e-20	356	398	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++RY+eK+k+R+F+K+irYe+RK++AesR R++GrF+k XP_027116800.1 356 RGSAISRYREKKKNRRFDKHIRYETRKVRAESRTRIRGRFAKM 398 6789*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MVLMKSQKPE ELESDGGVVG RRVCDFCGDA AALVYCRADS AKLCLACDRQ VHSTNPLFTK 60 HTRCLLCDAC DSTPATIFCS THSSVLCQNC DWDTHTNSSF SAVHDRRPLE GFCGCPSVTE 120 LLGILGFEEL GKKALLVSDA PASAALKEAS NTNSSRHDVD DAESVYELSD LLVWETPSIV 180 SLDDLIMSSD SSFGRSLQAM GVPPLPKNRN ATCGQHREEM LSQLRQMSKL EPNINCGQAD 240 VEPLVGFQLP VPEQNLQFGQ KDESLDHNSE LVLGSSYEAS AFQWGSDKVE DEVQDISTLL 300 GENIELNHIV PGKDSGVGDS PGPLRGSHEE QMHPPAAETL QTLPRPAIRE LNSQERGSAI 360 SRYREKKKNR RFDKHIRYET RKVRAESRTR IRGRFAKMAR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MVLMKSQKPE ELESDGGVVG RRVCDFCGDA AALVYCRADS AKLCLACDRQ VHSTNPLFTK  60
HTRCLLCDAC DSTPATIFCS THSSVLCQNC DWDTHTNSSF SAVHDRRPLE GFCGCPSVTE  120
LLGILGFEEL GKKALLVSDA PASAALKEAS NTNSSRHDVD DAESVYELSD LLVWETPSIV  180
SLDDLIMSSD SSFGRSLQAM GVPPLPKNRN ATCGQHREEM LSQLRQMSKL EPNINCGQAD  240
VEPLVGFQLP VPEQNLQFGQ KDESLDHNSE LVLGSSYEAS AFQWGSDKVE DEVQDISTLL  300
GENIELNHIV PGKDSGVGDS PGPLRGSHEE QMHPPAAETL QTLPRPAIRE LNSQERGSAI  360
SRYREKKKNR RFDKHIRYET RKVRAESRTR IRGRFAKMAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	8e-82	CO-like family protein