PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116502.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 238aa    MW: 27041.7 Da    PI: 5.2537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-1087134454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rEr RR+++N++f+eL ++l +    +  K +K +iL  A++ +++L
  XP_027116502.1  87 SKACRERLRREKLNDRFAELCSILEPG---RPMKTDKLAILGDAIRILNQL 134
                     5678**********************8...89***************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MERNSINNCC NAWEDIDLID INSFIDDVGL ANTDHPYAYW NQPQPPQSTG AELDASLTCA  60
TSQEKECAEV ECPRKRGRVD SCSRLGSKAC RERLRREKLN DRFAELCSIL EPGRPMKTDK  120
LAILGDAIRI LNQLKSEAQE YKEMNEKLSE EIKTLKADKN ELREEKLVLK ADKERMEQQL  180
KTMALPPSGY MAPHPAAYQP GLNKMPVFPG YSFVPMWQYL PPSARDTSQD HELRPPAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.21e-75bHLH family protein