PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 227aa    MW: 25637.1 Da    PI: 6.1499
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.8e-56501531101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_027116220.1  50 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 144
                     89******9999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_027116220.1 145 VDIVPREDL 153
                     ******987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MDQQGNGQLP AGPVQAPQTA GLPASSTQMA QHQLAYQHIH QQQQQQLQQQ LQNFWANQYQ  60
EIEQVTDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA RACEMFILEL TLRAWNHTEE  120
NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKEEMLAS IPRGPLPVGG PAEGVPYYYM  180
SAQSAPPVGA PGMYMGKPVD QALYGHQPRP YMPQQMWPHQ QQPPADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-81NF-YC family protein