PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116212.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 258aa    MW: 28786.6 Da    PI: 6.0796
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1789.2e-56811841101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_027116212.1  81 QLQNFWANQyqeIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 175
                     89******9999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_027116212.1 176 VDIVPREDL 184
                     ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MDQQGNGQLP GMEVVGSSAH VPYSVAPYQT NQMMGPSPSA SAGPVQAPQT AGLPASSTQM  60
AQHQLAYQHI HQQQQQQLQQ QLQNFWANQY QEIEQVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRAWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKEEMLA SIPRGPLPVG GPAEGVPYYY MSAQSAPPVG APGMYMGKPV DQALYGHQPR  240
PYMPQQMWPH QQQPPADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-81NF-YC family protein