PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027116112.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 812aa MW: 90081.4 Da PI: 7.6455

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027116112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118	4.7e-37	150	226	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC ad+se+k yh+rh+vC ++++a +v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_027116112.1 150 RCQVPGCGADISELKGYHKRHRVCLQCANAGAVVLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 226 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence
MDNSSSPSIA PISPSRHQTH PKPLDMSNAS MISAFLEDPT NSSLFDWSDF LDFNIDVEPF 60 ASAPFAADQQ QQEGPVSPSD SDQVSPPAED PGRVRKRDPR LVCTNFLAGR VPCACPELDE 120 KLELEEVTAL GGPGKKRPRT VRVRAGSNAR CQVPGCGADI SELKGYHKRH RVCLQCANAG 180 AVVLDGQSKR YCQQCGKFHI LSDFDEGKRS CRRKLERHNN RRRRKPNDPK GTVETEHQQT 240 TVAEDVSGDD DAGKDGICLS SENAEKETLL ESEGQQSTLC SAHDSQNIQN NSIVTSGSYG 300 DTQIYGEKEN PKYSRSPSFC DNKNAFSSVC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA 360 SMPVELEGYI RPGCTILTVF IAMPKFMWVK LSEKPAECLH NLVLSPGSML SGRDTFYIYL 420 NNMIFRVIKG GSSLFKVKVN EQAPKLHHVH HTCFEAGKPM EFVACGSNLL PSKLRFLVSF 480 MGKYLAHDLC VSSSCGKTEG DAGSLNHHSF KISVPQTEPG IFGPAFVEVE NEFGLSNFIP 540 VLIGDKEICA EMNIMQQRFA AKPCIKGLQL SATSSCGVSD LRQTEFSEFI MDVAWSLKKP 600 VMKSSTQFLT SVQIKRFTNL LNFLIENEST AILDRVVYYT RVLIDKNFVA TNITDADMEH 660 LWMNLDKARD ILYQKLRRNE HQLNNSRKFL LGERSFNRSS LDHMSSVATS NSQGEEVTSK 720 AKLTARVDIS SSHEGGTTVP LLTGEVVMRV NVSERPGKSC SPLLIKTGFS SRPLIFAVTA 780 ATVCIGLCAV LFHPETVGEV ATTIRKCLQQ NS

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence

MDNSSSPSIA PISPSRHQTH PKPLDMSNAS MISAFLEDPT NSSLFDWSDF LDFNIDVEPF  60
ASAPFAADQQ QQEGPVSPSD SDQVSPPAED PGRVRKRDPR LVCTNFLAGR VPCACPELDE  120
KLELEEVTAL GGPGKKRPRT VRVRAGSNAR CQVPGCGADI SELKGYHKRH RVCLQCANAG  180
AVVLDGQSKR YCQQCGKFHI LSDFDEGKRS CRRKLERHNN RRRRKPNDPK GTVETEHQQT  240
TVAEDVSGDD DAGKDGICLS SENAEKETLL ESEGQQSTLC SAHDSQNIQN NSIVTSGSYG  300
DTQIYGEKEN PKYSRSPSFC DNKNAFSSVC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA  360
SMPVELEGYI RPGCTILTVF IAMPKFMWVK LSEKPAECLH NLVLSPGSML SGRDTFYIYL  420
NNMIFRVIKG GSSLFKVKVN EQAPKLHHVH HTCFEAGKPM EFVACGSNLL PSKLRFLVSF  480
MGKYLAHDLC VSSSCGKTEG DAGSLNHHSF KISVPQTEPG IFGPAFVEVE NEFGLSNFIP  540
VLIGDKEICA EMNIMQQRFA AKPCIKGLQL SATSSCGVSD LRQTEFSEFI MDVAWSLKKP  600
VMKSSTQFLT SVQIKRFTNL LNFLIENEST AILDRVVYYT RVLIDKNFVA TNITDADMEH  660
LWMNLDKARD ILYQKLRRNE HQLNNSRKFL LGERSFNRSS LDHMSSVATS NSQGEEVTSK  720
AKLTARVDIS SSHEGGTTVP LLTGEVVMRV NVSERPGKSC SPLLIKTGFS SRPLIFAVTA  780
ATVCIGLCAV LFHPETVGEV ATTIRKCLQQ NS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	224	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein