PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027116055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 493aa MW: 51823.1 Da PI: 8.2593 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.2e-12 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ XP_027116055.1 52 DQADCIYYLRTGLCGYGARCRFNHPR 77 6789********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtG Ck+G++Ck++H++ XP_027116055.1 98 QPVCQFYMRTGNCKFGASCKYHHPR 122 689********************96 PP | |||||||
3 | zf-CCCH | 34.1 | 4.5e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ +tG+CkyG +Ck++H++ XP_027116055.1 143 GEKDCSYYVKTGQCKYGVTCKYHHPQ 168 7889********************97 PP | |||||||
4 | zf-CCCH | 36 | 1.2e-11 | 315 | 341 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p XP_027116055.1 315 PGQPECQYYMKYGDCKFGASCRYHHPP 341 5789*********************97 PP | |||||||
5 | zf-CCCH | 31.1 | 4e-10 | 364 | 387 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++ ++G Ck+G++CkF H++ XP_027116055.1 364 AVCSHYIQNGVCKFGPSCKFDHPM 387 78********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL 60 RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH 120 PRQGSGSQTP VNLNFFGYPL RPGEKDCSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG 180 PGPGPLPAPA TVPVPAIYPP VQSPSVQSSQ QYGVMTGNWP VPRPTILPGS YFPGTYGPML 240 LPPGMVPLPA WTSYPSPVSL AATASNQPAV GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG 300 PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKSNP VLSPMGLPLR 360 PGAAVCSHYI QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS 420 SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS 480 SSTVHGSEVR TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-121 | C3H family protein |