PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115945.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 675aa    MW: 73886.1 Da    PI: 6.5171
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.2e-29217270155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  XP_027115945.1 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270
                     79*******************.********************************8 PP
2Myb_DNA-binding42.61.4e-13219269148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e+++++v av+qlG +   +k+I + m+  g+t++++ s++qky+
   XP_027115945.1 219 RVVWSVELHQQFVAAVNQLGIDkaVPKKILELMNvPGLTRENVASHLQKYR 269
                      678***********************************************7 PP
3Response_reg76.11.3e-25371451109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l++  y ev+ +  +e al+ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  G
  XP_027115945.1  37 VLVVDDDPTCLRILEKMLRNCLY-EVTKCNRAEIALKLLRDNRngYDIVISDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDSKNVVMKGVTHG 129
                     89*********************.***************999999**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +e+l +
  XP_027115945.1 130 ACDYLIKPVRIEALKN 145
                     ************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    
MNLGGGQTAK AMSAPSSSAS LKSGDVVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNCLYE  60
VTKCNRAEIA LKLLRDNRNG YDIVISDVHM PDMDGFKLLE QVGLEMDLPV IMMSADDSKN  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKHEWKD KDFEQSGSAE EGERLVKPLE  180
DVDYSSSATE GNWKTSKRRK DEEDEPEEKD DTSSLKKPRV VWSVELHQQF VAAVNQLGID  240
KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRLSGVSS HQNGLNSSFM GTPEATFASM  300
SSLGGLDLQA LAATGHIPAQ SLASLQALGR PTTKNSISMP MVDQRNLFSF ETPKLRFGDG  360
QQQLNNNSKQ INLLHGIPTN MEPKQLASLN QSAQTFGGLN MQVNPQASQS SSLLVQMSHP  420
MSRTQMLNEN KGNHVPRLQS SIGQPILSNG IHSGVLSRNG IVDNVRGAVY NPVSQASSLV  480
DFSINKSAEL PGNSFAQVSN SGISSLTSKG IIQEEVSSEV KGSRGFIHSY DIFNELQQHK  540
AQDWGMQNVG STFDASQHSA LQGSLDVSPS SLVQQGFSSS QKDRNVSIGD AIFSGGEGAH  600
CNNSKFGQQF NSFVADNTLR VKAERLPDSG CQNNLFPQQF GQEDLMSALL KQQEGIGSVE  660
SEFGFDGYPL DKFPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0ARR-B family protein