PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115874.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 419aa MW: 45347.8 Da PI: 6.9532

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.2e-33	217	275	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ dp++v++tYeg+H h+ XP_027115874.1 217 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPSCGVKKRVERSSGDPTTVVTTYEGTHMHP 275 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPVAS SPPPSYGGGG 60 GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS 120 PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE 180 DRDQDKTKKH LKPKKKNQKR QKEPRFAFMT KSEVDHLDDG YRWRKYGQKA VKNSPFPRSY 240 YRCTSPSCGV KKRVERSSGD PTTVVTTYEG THMHPTPLTS RGSFGLVPES SASFICGPSG 300 VGSSNGGGGA GEAVTIGAVF GGAGSGSGPG PSSFFPAPMS QYHHQQPQQF QQQQLQLLPF 360 FRVPTAPASL HFNTPSSSFA HMIVQESSYC PPPPSSFVDN GLLEDIVPSE MLIKEPKKE

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MEKDKRLEKN IKPENPMSNL TFSDQIPIPA TLAAIPNIYD IPIGSAPVAS SPPPSYGGGG  60
GGAAHPHDHD MVKMESFGFI DMLTVPDYPC PSIYEMVFQQ LPPMKFQSPP LSQPLLQPQS  120
PLPPPPPPSN HINNNNAPPE SSDVATTPAT PNSPSVSTSS SDAQNDDQQQ NKTPVEGEQE  180
DRDQDKTKKH LKPKKKNQKR QKEPRFAFMT KSEVDHLDDG YRWRKYGQKA VKNSPFPRSY  240
YRCTSPSCGV KKRVERSSGD PTTVVTTYEG THMHPTPLTS RGSFGLVPES SASFICGPSG  300
VGSSNGGGGA GEAVTIGAVF GGAGSGSGPG PSSFFPAPMS QYHHQQPQQF QQQQLQLLPF  360
FRVPTAPASL HFNTPSSSFA HMIVQESSYC PPPPSSFVDN GLLEDIVPSE MLIKEPKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-41	WRKY family protein