PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115655.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 368aa MW: 40556.5 Da PI: 6.3944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg++F++ L H +H XP_027115655.1 149 YECKTCGRTFPSFQALGGHRASH 171 99**********99999998887 PP
2	zf-C2H2	12.6	0.00041	242	264	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_027115655.1 242 HECSHCGAEFPSGQALGGHMRRH 264 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MVEAVEEVAG PQDLPHIVKG KRTKRQRPQS PIPFTITTQY SSSGEGGYVS NGDNCINNVN 60 NNTNTNNNHN NSSSSSAEEA RPDDHASNEE DEYTAKCLIL LAQGGDVIKE PPAINKFDQA 120 QEFGTEKFNS KRYIEAPISG NGKAGMYVYE CKTCGRTFPS FQALGGHRAS HKKPKNMAAA 180 EEKKLFFDMS DDEEETIIFK NGKNKSNYNN SSPLSLELIN NNNRGTSSNS NLYKSASFPK 240 IHECSHCGAE FPSGQALGGH MRRHRGAPAM TSTTLSLGQL SPETTDQDSD EAEANKRTSN 300 GLSLDLNLPA PEDDHHNKDP NKFSLASKHQ QIPYQHQQQN QKEEEEKEAE AKPALVLSST 360 PKLVRCHY

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MVEAVEEVAG PQDLPHIVKG KRTKRQRPQS PIPFTITTQY SSSGEGGYVS NGDNCINNVN  60
NNTNTNNNHN NSSSSSAEEA RPDDHASNEE DEYTAKCLIL LAQGGDVIKE PPAINKFDQA  120
QEFGTEKFNS KRYIEAPISG NGKAGMYVYE CKTCGRTFPS FQALGGHRAS HKKPKNMAAA  180
EEKKLFFDMS DDEEETIIFK NGKNKSNYNN SSPLSLELIN NNNRGTSSNS NLYKSASFPK  240
IHECSHCGAE FPSGQALGGH MRRHRGAPAM TSTTLSLGQL SPETTDQDSD EAEANKRTSN  300
GLSLDLNLPA PEDDHHNKDP NKFSLASKHQ QIPYQHQQQN QKEEEEKEAE AKPALVLSST  360
PKLVRCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	7e-60	C2H2 family protein