PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115457.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 694aa    MW: 76896.7 Da    PI: 5.7852
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23135235198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     + + + s++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + s++
  XP_027115457.1 135 FCKILTASDTSTHGGFSVLRKHATEClpqldMTQATPSQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGSNG 227
                     99**************************999556667789************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+++r
  XP_027115457.1 228 ELRVGIRR 235
                     9*****98 PP
2Auxin_resp97.51.9e-32261340183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t++ F v+Y+Pr+  s+F++ ++k+++a+++ +s+GmRfkm+fe+eds+e+r++Gt+vg+++++p +Wp+S WrsLk
  XP_027115457.1 261 ASHAIITQTLFVVYYKPRT--SQFIIGLNKYLAAVSHGFSLGMRFKMKFEGEDSPEKRFTGTIVGLEEVSP-QWPDSLWRSLK 340
                     6899**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MAHVDGFRGG ASSAPSHALP ARDTGQGDDM YTELWKACAG PLVDVPRAGE RVFYFPQGHM  60
EQLEASMNQE LNQQIPQFNL PSKILCKVVN VQLLAEAETD EVYAQITLHP EVNEQEPSSP  120
DPCTPDPPKP TIYSFCKILT ASDTSTHGGF SVLRKHATEC LPQLDMTQAT PSQDLVAKDL  180
HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGSNGELR VGIRRLARQQ  240
SPIPQSVISS QSMHLGVLAT ASHAIITQTL FVVYYKPRTS QFIIGLNKYL AAVSHGFSLG  300
MRFKMKFEGE DSPEKRFTGT IVGLEEVSPQ WPDSLWRSLK IQWDEPASIK RPERVSPWEI  360
EPFAVVSSAD VAAQPVPNSK RPRPLDLPTS ENRAIAAASP FWCPEATQLL ELSHYDNITE  420
VQSTDDQSFW PPKPKNLNSN ICSGSSFSSR GTWPRPLANG SLNQENVSAK SPLCDYDSPM  480
SSRASNGHVL GQVERFKRLE NSSSCRLFGI DLRSNSKNLS LLDKDGPSTV VPNGANDAEP  540
PVGISDGDVL KSCNEMKLGQ SEVSPKDATN RQGCSTTTRT RTKVQMQGVA VGRAVDLTAL  600
ESYHDLISEL EKMFELEGEL SPRNKWAVVY TDDEGDMMLV GDDPWQEFCK MVRKIFIYSS  660
EEVKKMNTGD KFPLLTLDGE GTVQSLDSEL KLES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380384KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein