PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115451.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 606aa MW: 66518.9 Da PI: 6.837

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	439	485	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_027115451.1 439 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 485 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MKFEVGMGGL IWNDEDKTVV AAVLGTKAFD YLFSSSLSAE GSLMAMGNDE NLQNKLSDLV 60 EHPNSSNFSW NYAIFWQISR SKSGDLVLGW GDGCCREPRE GEESEVTRIL NLRLEDETQQ 120 RMRKRVLQKL HTCFGGSDED SYAFGLDRVT DTEMFFLASM YFSFPRGEGG PGKSFGSGKH 180 LWVSDALKSS ADYCVRSFLA KSAGMQTLVL IPTDVGVVEL GSVRSIPESL ELMQSVRSSF 240 SSFSSFIRAK QAAAAVMGAD KKDGNAPCPN LGIGERPDGI PKIFGQDLNP GNPQSREKLA 300 IRKPNEEHWD GYPNGNRIAF PSPRNGIHGA TWTTFSHVKP GNGAELYSPQ TQTSKLQGLV 360 NGSGDEFRLG NFQHQKPTQM QIDFTGATSR PVISRPLCVD SEHSDVEASC KEDVSVLGDE 420 KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIAY 480 ITELQKKLKD MESERDKFGS ASRDALPSEA SPSSDVQSLV PEIDIQGAHD KVIVKVSCPL 540 DTHPASRVIH GLKEAGVNVI ESKLAAGNDK VFHTFVVKPQ GSEQLTKDKL IAAISRSCES 600 TSLQAL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MKFEVGMGGL IWNDEDKTVV AAVLGTKAFD YLFSSSLSAE GSLMAMGNDE NLQNKLSDLV  60
EHPNSSNFSW NYAIFWQISR SKSGDLVLGW GDGCCREPRE GEESEVTRIL NLRLEDETQQ  120
RMRKRVLQKL HTCFGGSDED SYAFGLDRVT DTEMFFLASM YFSFPRGEGG PGKSFGSGKH  180
LWVSDALKSS ADYCVRSFLA KSAGMQTLVL IPTDVGVVEL GSVRSIPESL ELMQSVRSSF  240
SSFSSFIRAK QAAAAVMGAD KKDGNAPCPN LGIGERPDGI PKIFGQDLNP GNPQSREKLA  300
IRKPNEEHWD GYPNGNRIAF PSPRNGIHGA TWTTFSHVKP GNGAELYSPQ TQTSKLQGLV  360
NGSGDEFRLG NFQHQKPTQM QIDFTGATSR PVISRPLCVD SEHSDVEASC KEDVSVLGDE  420
KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAIAY  480
ITELQKKLKD MESERDKFGS ASRDALPSEA SPSSDVQSLV PEIDIQGAHD KVIVKVSCPL  540
DTHPASRVIH GLKEAGVNVI ESKLAAGNDK VFHTFVVKPQ GSEQLTKDKL IAAISRSCES  600
TSLQAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	421	429	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein