PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115450.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 620aa MW: 68076.7 Da PI: 6.8375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	453	499	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_027115450.1 453 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 499 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MANSGIKEGW LKLEMKFEVG MGGLIWNDED KTVVAAVLGT KAFDYLFSSS LSAEGSLMAM 60 GNDENLQNKL SDLVEHPNSS NFSWNYAIFW QISRSKSGDL VLGWGDGCCR EPREGEESEV 120 TRILNLRLED ETQQRMRKRV LQKLHTCFGG SDEDSYAFGL DRVTDTEMFF LASMYFSFPR 180 GEGGPGKSFG SGKHLWVSDA LKSSADYCVR SFLAKSAGMQ TLVLIPTDVG VVELGSVRSI 240 PESLELMQSV RSSFSSFSSF IRAKQAAAAV MGADKKDGNA PCPNLGIGER PDGIPKIFGQ 300 DLNPGNPQSR EKLAIRKPNE EHWDGYPNGN RIAFPSPRNG IHGATWTTFS HVKPGNGAEL 360 YSPQTQTSKL QGLVNGSGDE FRLGNFQHQK PTQMQIDFTG ATSRPVISRP LCVDSEHSDV 420 EASCKEDVSV LGDEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS 480 KMDKASLLGD AIAYITELQK KLKDMESERD KFGSASRDAL PSEASPSSDV QSLVPEIDIQ 540 GAHDKVIVKV SCPLDTHPAS RVIHGLKEAG VNVIESKLAA GNDKVFHTFV VKPQGSEQLT 600 KDKLIAAISR SCESTSLQAL

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MANSGIKEGW LKLEMKFEVG MGGLIWNDED KTVVAAVLGT KAFDYLFSSS LSAEGSLMAM  60
GNDENLQNKL SDLVEHPNSS NFSWNYAIFW QISRSKSGDL VLGWGDGCCR EPREGEESEV  120
TRILNLRLED ETQQRMRKRV LQKLHTCFGG SDEDSYAFGL DRVTDTEMFF LASMYFSFPR  180
GEGGPGKSFG SGKHLWVSDA LKSSADYCVR SFLAKSAGMQ TLVLIPTDVG VVELGSVRSI  240
PESLELMQSV RSSFSSFSSF IRAKQAAAAV MGADKKDGNA PCPNLGIGER PDGIPKIFGQ  300
DLNPGNPQSR EKLAIRKPNE EHWDGYPNGN RIAFPSPRNG IHGATWTTFS HVKPGNGAEL  360
YSPQTQTSKL QGLVNGSGDE FRLGNFQHQK PTQMQIDFTG ATSRPVISRP LCVDSEHSDV  420
EASCKEDVSV LGDEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  480
KMDKASLLGD AIAYITELQK KLKDMESERD KFGSASRDAL PSEASPSSDV QSLVPEIDIQ  540
GAHDKVIVKV SCPLDTHPAS RVIHGLKEAG VNVIESKLAA GNDKVFHTFV VKPQGSEQLT  600
KDKLIAAISR SCESTSLQAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	435	443	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein