PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115041.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 354aa MW: 40445.1 Da PI: 5.483

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114	9.8e-36	43	134	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d+++++++sws+ g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++ XP_027115041.1 43 FLTKTFDMVDDSTTDHIVSWSRGGHSFVVWDPHAFSTALLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEAFLRGQKHLLRN 128 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_027115041.1 129 IRRRKA 134 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MDPLYPVKEE YPDQYHDGSS SSPPGTLAPQ PMEGLHDAGP PPFLTKTFDM VDDSTTDHIV 60 SWSRGGHSFV VWDPHAFSTA LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEAFLR 120 GQKHLLRNIR RRKAPSQPTS PQQALGPCVE VGRFGLDAEV DRLRRDKQVL MMELVKLRQQ 180 QQSTRAHLQS MEVRLQGTEK KQQHMMSFLA KAMQNPEFIH QLIQQKDKRK ELEEAFTKKR 240 PRPIDQGPGG GESSRSGEVR NHVKAEPSEF GDHYGYQVSE LEALALEMQG FGRAARRDRD 300 EEQDELEKEL DEGFWEELLN EGFDEEGETG KEGGGEEDVN VLADRFGFLG SSPK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MDPLYPVKEE YPDQYHDGSS SSPPGTLAPQ PMEGLHDAGP PPFLTKTFDM VDDSTTDHIV  60
SWSRGGHSFV VWDPHAFSTA LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEAFLR  120
GQKHLLRNIR RRKAPSQPTS PQQALGPCVE VGRFGLDAEV DRLRRDKQVL MMELVKLRQQ  180
QQSTRAHLQS MEVRLQGTEK KQQHMMSFLA KAMQNPEFIH QLIQQKDKRK ELEEAFTKKR  240
PRPIDQGPGG GESSRSGEVR NHVKAEPSEF GDHYGYQVSE LEALALEMQG FGRAARRDRD  300
EEQDELEKEL DEGFWEELLN EGFDEEGETG KEGGGEEDVN VLADRFGFLG SSPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	243	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-121	HSF family protein