PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027115030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 490aa MW: 54258.1 Da PI: 9.1832 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027115030.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_027115030.1 153 WKCEKCSKIYAVQSDWKAHTKTC 175 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence |
MFHYTVMSNS ASLSEEASVS SVSKVQDFGS LNPMVQTSSS HQQPQKIKKK RNLPGNPDPD 60 AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEIKKRAYVC 120 PEPTCVHHHP SRALGDLTGI KKHYCRKHGE KKWKCEKCSK IYAVQSDWKA HTKTCGTREY 180 RCDCGTLFSR KDSFITHRAF CDALAQESAR LSANSVLAST AAATANPQLF RLNFHQTTTT 240 PSSLFPFPPT QHDQQQPHFP NPPTPTPTDH HISLNHPWVD SCQNPKPTQY PNQPQLLHDI 300 KPETLHLPIS SQFLYQEPPP PTHKRINIPS LIPVQTQLND TAGVHHLSAT ALLQKAATLG 360 AHSVGHVNSA MTQLDMSTIG HVTNGIPPEY SGFTTSANLA AWQKSDRLTR DFLGLTGDHQ 420 SCGGGGGSVN GNGNANIDVN VNVNMRGVLS FTGSVEFPAT YERDLSLLKH QSFGFAEPAA 480 SEAWRNCSRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-115 | C2H2 family protein |