PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114968.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 674aa MW: 71933.9 Da PI: 6.9398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.1	5.1e-16	353	399	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_027114968.1 353 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 399 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MPSVRSGETY LNQEDEMGPW LNYPVDDGFR SDFCSEILPE ISGVTGNETS ALNSFGLVVK 60 GSCNQMPQHS YAVPVHNGLD IEARNASKVS SSRTGLLSPY SSQQCQLSVA PAGSGVSSVV 120 MNTTSNNPVT FFGDTGQGQA SPGGLVSMKM QNQKVGASNF LNFTHFSRPA ALVRANLEKT 180 DGVAASCSSG IEKVSAVSSS SPVKSTHKPS SNSQKDICVH NQPKLVSTKV DSRPSVDKPP 240 EESCSAHRPD NLHWDDSIKN DKSSSPIIGS SITKEVKDSE NPVEPVVAAS SVCSANSGEG 300 ASNDQMHTLK RKHCDNEESE SRSEEIEEES VGIKKVAHAR GVSGSKRSRA AEVHNLSERR 360 RRDRINEKMR ALQELIPNCN KADKASMLDE AIEYLKTLQL QVQVMSMGAG LCMPPMMFPT 420 GLQHMHAAHV PHFPPMAGGM GMGMGYGMGM LDLNSGSPRF PIFPLPPMQG AHFPSPTISG 480 SSGFQGLAGS NLQVFGHPGQ GVPMSIPRAP LVPLVGQAPI SSAVGVDTSR MGIHVEASNA 540 SPTLNSVVEV QNKNSQLNHK TDTGSSISQT SSQKKKGSSS MFVQNLDRLL ISFLADLISI 600 RCAYSSTLLS RQLQATNKEF DQSAMTSKDD QAPDVCAAAS INMASTTDLV CDKEKDVYAT 660 SHVCELKFFA KIIG

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MPSVRSGETY LNQEDEMGPW LNYPVDDGFR SDFCSEILPE ISGVTGNETS ALNSFGLVVK  60
GSCNQMPQHS YAVPVHNGLD IEARNASKVS SSRTGLLSPY SSQQCQLSVA PAGSGVSSVV  120
MNTTSNNPVT FFGDTGQGQA SPGGLVSMKM QNQKVGASNF LNFTHFSRPA ALVRANLEKT  180
DGVAASCSSG IEKVSAVSSS SPVKSTHKPS SNSQKDICVH NQPKLVSTKV DSRPSVDKPP  240
EESCSAHRPD NLHWDDSIKN DKSSSPIIGS SITKEVKDSE NPVEPVVAAS SVCSANSGEG  300
ASNDQMHTLK RKHCDNEESE SRSEEIEEES VGIKKVAHAR GVSGSKRSRA AEVHNLSERR  360
RRDRINEKMR ALQELIPNCN KADKASMLDE AIEYLKTLQL QVQVMSMGAG LCMPPMMFPT  420
GLQHMHAAHV PHFPPMAGGM GMGMGYGMGM LDLNSGSPRF PIFPLPPMQG AHFPSPTISG  480
SSGFQGLAGS NLQVFGHPGQ GVPMSIPRAP LVPLVGQAPI SSAVGVDTSR MGIHVEASNA  540
SPTLNSVVEV QNKNSQLNHK TDTGSSISQT SSQKKKGSSS MFVQNLDRLL ISFLADLISI  600
RCAYSSTLLS RQLQATNKEF DQSAMTSKDD QAPDVCAAAS INMASTTDLV CDKEKDVYAT  660
SHVCELKFFA KIIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	363	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	7e-40	bHLH family protein