PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114966.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 731aa MW: 78080.6 Da PI: 6.5089

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.6e-16	449	495	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_027114966.1 449 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 495 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MPLSEFLRMA RGKLESAQPK TASSTDLSPA TENDLVELLW ENGQILMQGQ SNRVKKSPNL 60 NDFPSQEPGI RDRFTGNVST SKVGKFIEIG STLNDAMPSV RSGETYLNQE DEMGPWLNYP 120 VDDGFRSDFC SEILPEISGV TGNETSALNS FGLVVKGSCN QMPQHSYAVP VHNGLDIEAR 180 NASKVSSSRT GLLSPYSSQQ CQLSVAPAGS GVSSVVMNTT SNNPVTFFGD TGQGQASPGG 240 LVSMKMQNQK VGASNFLNFT HFSRPAALVR ANLEKTDGVA ASCSSGIEKV SAVSSSSPVK 300 STHKPSSNSQ KDICVHNQPK LVSTKVDSRP SVDKPPEESC SAHRPDNLHW DDSIKNDKSS 360 SPIIGSSITK EVKDSENPVE PVVAASSVCS ANSGEGASND QMHTLKRKHC DNEESESRSE 420 EIEEESVGIK KVAHARGVSG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKADK 480 ASMLDEAIEY LKTLQLQVQV MSMGAGLCMP PMMFPTGLQH MHAAHVPHFP PMAGGMGMGM 540 GYGMGMLDLN SGSPRFPIFP LPPMQGAHFP SPTISGSSGF QGLAGSNLQV FGHPGQGVPM 600 SIPRAPLVPL VGQAPISSAV GVDTSRMGIH VEASNASPTL NSVVEVQNKN SQLNHKTDTG 660 SSISQTSSQL QATNKEFDQS AMTSKDDQAP DVCAAASINM ASTTDLVCDK EKDVYATSHV 720 CELKFFAKII G

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MPLSEFLRMA RGKLESAQPK TASSTDLSPA TENDLVELLW ENGQILMQGQ SNRVKKSPNL  60
NDFPSQEPGI RDRFTGNVST SKVGKFIEIG STLNDAMPSV RSGETYLNQE DEMGPWLNYP  120
VDDGFRSDFC SEILPEISGV TGNETSALNS FGLVVKGSCN QMPQHSYAVP VHNGLDIEAR  180
NASKVSSSRT GLLSPYSSQQ CQLSVAPAGS GVSSVVMNTT SNNPVTFFGD TGQGQASPGG  240
LVSMKMQNQK VGASNFLNFT HFSRPAALVR ANLEKTDGVA ASCSSGIEKV SAVSSSSPVK  300
STHKPSSNSQ KDICVHNQPK LVSTKVDSRP SVDKPPEESC SAHRPDNLHW DDSIKNDKSS  360
SPIIGSSITK EVKDSENPVE PVVAASSVCS ANSGEGASND QMHTLKRKHC DNEESESRSE  420
EIEEESVGIK KVAHARGVSG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKADK  480
ASMLDEAIEY LKTLQLQVQV MSMGAGLCMP PMMFPTGLQH MHAAHVPHFP PMAGGMGMGM  540
GYGMGMLDLN SGSPRFPIFP LPPMQGAHFP SPTISGSSGF QGLAGSNLQV FGHPGQGVPM  600
SIPRAPLVPL VGQAPISSAV GVDTSRMGIH VEASNASPTL NSVVEVQNKN SQLNHKTDTG  660
SSISQTSSQL QATNKEFDQS AMTSKDDQAP DVCAAASINM ASTTDLVCDK EKDVYATSHV  720
CELKFFAKII G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	459	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-40	bHLH family protein