PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114694.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 356aa MW: 39190.3 Da PI: 5.1459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	180	225	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++K++iL A+eY+k+Lq XP_027114694.1 180 HIIAERKRREQLSQRFMALSAIVPGL-----KKMDKSSILGDAIEYLKHLQ 225 899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDNSASSWFS QLGMEDPLSN DDFNIMDFLN DELSAALADD FQNSSFPEGN PSFSNIFPSC 60 NSTPALCEPS GMEAHPVGFE TPAKQHKTNG YDSSNIHNMP NFGQASSSPM ILTFGNPNMP 120 EINPHQVTLG TLNPEDDAVS EVLTSHGSFA KLDEAAKTTV QTKAKKPGGR VRPPSQTYDH 180 IIAERKRREQ LSQRFMALSA IVPGLKKMDK SSILGDAIEY LKHLQERVKT LEEKAARQTM 240 ESVVLVKRSQ LLLEDERSSD EMAGPNEQPL PEFEAKVCDK NVLLRIHCKN YKGVLIKILS 300 QIDKLNLAVV NTCVSAFGNF ALDVTIIAEA EKEVNLTTKE LVDTLRSALQ QGKHAA

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDNSASSWFS QLGMEDPLSN DDFNIMDFLN DELSAALADD FQNSSFPEGN PSFSNIFPSC  60
NSTPALCEPS GMEAHPVGFE TPAKQHKTNG YDSSNIHNMP NFGQASSSPM ILTFGNPNMP  120
EINPHQVTLG TLNPEDDAVS EVLTSHGSFA KLDEAAKTTV QTKAKKPGGR VRPPSQTYDH  180
IIAERKRREQ LSQRFMALSA IVPGLKKMDK SSILGDAIEY LKHLQERVKT LEEKAARQTM  240
ESVVLVKRSQ LLLEDERSSD EMAGPNEQPL PEFEAKVCDK NVLLRIHCKN YKGVLIKILS  300
QIDKLNLAVV NTCVSAFGNF ALDVTIIAEA EKEVNLTTKE LVDTLRSALQ QGKHAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-53	bHLH family protein