PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027114693.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 357aa MW: 39455.7 Da PI: 6.3183

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027114693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	167	212	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++K++iL A+eY+k+Lq XP_027114693.1 167 HIIAERKRREQLSQRFMALSAIVPGL-----KKMDKSSILGDAIEYLKHLQ 212 899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MEDPLSNDDF NIMDFLNDEL SAALADDFQN SSFPEGNPSF SNIFPSCNST PALCEPSGME 60 AHPVGFETPA KQHKTNGYDS SNIHNMPNFG QASSSPMILT FGNPNMPEIN PHQVTLGTLN 120 PEDDAVSEVL TSHGSFAKLD EAAKTTVQTK AKKPGGRVRP PSQTYDHIIA ERKRREQLSQ 180 RFMALSAIVP GLKKMDKSSI LGDAIEYLKH LQERVKTLEE KAARQTMESV VLVKRSQLLL 240 EDERSSDEMA GPNEQPLPEF EAKVCDKNVL LRIHCKNYKG VLIKILSQID KLNLAVVNTC 300 VSAFGNFALD VTIIAEASFL YIGGKRSQPD NKRTGRYSSI CPPTRQACRL VLSERSQ

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MEDPLSNDDF NIMDFLNDEL SAALADDFQN SSFPEGNPSF SNIFPSCNST PALCEPSGME  60
AHPVGFETPA KQHKTNGYDS SNIHNMPNFG QASSSPMILT FGNPNMPEIN PHQVTLGTLN  120
PEDDAVSEVL TSHGSFAKLD EAAKTTVQTK AKKPGGRVRP PSQTYDHIIA ERKRREQLSQ  180
RFMALSAIVP GLKKMDKSSI LGDAIEYLKH LQERVKTLEE KAARQTMESV VLVKRSQLLL  240
EDERSSDEMA GPNEQPLPEF EAKVCDKNVL LRIHCKNYKG VLIKILSQID KLNLAVVNTC  300
VSAFGNFALD VTIIAEASFL YIGGKRSQPD NKRTGRYSSI CPPTRQACRL VLSERSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	8e-48	bHLH family protein