PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113896.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 311aa MW: 35110.2 Da PI: 8.6846

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	4e-28	54	104	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng+lKKA+EL vLCdaevaviifs+tgkl+e++s XP_027113896.1 54 KKIENANSRQVTFSKRRNGLLKKAYELGVLCDAEVAVIIFSNTGKLFEFAS 104 68***********************************************86 PP
2	K-box	65.2	2.4e-22	138	217	20	99
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e + Lk+eie+L+ ++ ++lG+dL+ L lkeLq++eqqL+++l++i+++K+++l++q+e+ ++e+++ +en++Lr+k+ XP_027113896.1 138 EEDILKEEIEKLKLKHSQMLGKDLDGLGLKELQEVEQQLNEGLSSIKARKERMLMDQLEQAMMQEQRTLQENQSLRTKIV 217 6788**************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MHMYRVRRES KLVKNQDYLL FICFFLFSFS VFDRLAGGVS AESPPMGRGK IEIKKIENAN 60 SRQVTFSKRR NGLLKKAYEL GVLCDAEVAV IIFSNTGKLF EFASSSMPQI IARYNKCFEP 120 SDCATVDHQP EPLQGPKEED ILKEEIEKLK LKHSQMLGKD LDGLGLKELQ EVEQQLNEGL 180 SSIKARKERM LMDQLEQAMM QEQRTLQENQ SLRTKIVELE HLLPSSGHPA PNYIDCYPVE 240 KANMPAKGLT AHPDKALTSV ENEDSDTNLR LGLSSGTFEK RKAPEAADSG AVGAQKRKRR 300 TRSSTYGRQI N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	300	KRKAPEAADSGAVGAQKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-63	MIKC_MADS family protein