PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113738.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 307aa    MW: 34007.6 Da    PI: 9.5134
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32146202158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+RgsgGrF
  XP_027113738.1 146 EEPVYVNAKQYHGILRRRQSRAKAEMEKKI-MKGRKPYLHESRHQHAMRRARGSGGRF 202
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MPTIARNEGR QLETEVHNIT SSRVYTQPWW RGYESTCLPS PGESVNGSVS ESVTKERDTS  60
VAPPSESNGS GGQGPQQVKH APSTIPMSGH LDSPSQMELV GHSIMLTPYP YPDPAYGGVI  120
TYGAPVHPQY FGIHQTRMPL PLQMEEEPVY VNAKQYHGIL RRRQSRAKAE MEKKIMKGRK  180
PYLHESRHQH AMRRARGSGG RFLNTKKLEN NESRSSKSAS KEQTKCGDAV PTQSGNSSGS  240
EHLSTDCNGY SDQLREKEQM LSNGNGRGIS SFYYQQSSGS ERGRQHFNQE SWSLLVNQAP  300
RGAASSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.12e-45NF-YA family protein