PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113732.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 303aa    MW: 33530.1 Da    PI: 9.5427
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32142198158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+RgsgGrF
  XP_027113732.1 142 EEPVFVNAKQYHGILRRRQSRAKAEMEKKI-MKGRKPYLHESRHQHAMRRARGSGGRF 198
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MPTIARNEGR QLETEVHNIT SSRVYTQPWW RGYESTCLPS PGESVNGSVS ESVTKERDTS  60
VAPPSESNGS GGQGPQQVKH APSTIPMSGH LDSPSQMELV GHSIMLTPYP YPDPAYGGVI  120
TYGAPYFGIH QTRMPLPLQM EEEPVFVNAK QYHGILRRRQ SRAKAEMEKK IMKGRKPYLH  180
ESRHQHAMRR ARGSGGRFLN TKKLENNESR SSKSASKEQT KCGDAVPTQS GNSSGSEHLS  240
TDCNGYSDQL REKEQMLSNG NGRGISSFYY QQSSGSERGR QHFNQESWSL LVNQAPRGAA  300
SSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.27e-46NF-YA family protein