PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113726.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 735aa MW: 78910.4 Da PI: 6.8873

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113726.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	312	332	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_027113726.1 312 PCPDFRK-GACRRGDACEYAHG 332 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MCVGPERSNS SSSSAAAQSP VDIKTNNTKD MNKLSVVTED CFSSLLELAA DNDVDGFKQM 60 VERDPSAIDG AGLWLVRKKG TKQIVREERT PLMVAAAYGS VDVLKLIVSL XEVDLNRACG 120 PDKCTALHCA TAGGAVNAVD VVKVLLSAGA DPTLRDANXL RPVDVIVVPP KLATAKLALE 180 ELLVNNPSDG SFGNCNLSIS VTTSNGSSPI LSSSPENGSP CSPSELVSSP ITSKFIGAPA 240 NSVSEKKEYP IDPXLPDIKN SIYATDEFRM FSFKVRPCXR AYSHDWTECP FVHPGENARR 300 RDPRKFHYSC VPCPDFRKGA CRRGDACEYA HGVFECWLHP AQYRTRLCKD GTSCSRRVCF 360 FAHTAEELRP LYVSTGSAVP XPRSAASAAG VMDMAAALNL LPGSPSSHPV MSPSAFNQPM 420 SPTANGMSHS SGAWTQPIVP ALHLPGSNLQ SSRLRSSLSA RDIPPAEFNM LQDFDAQQLV 480 LNDLACFSQS RPNSLSLNHS GRSKTLTPSN LEELFSAEMN SSPRYADPAA GGGVFSPSHK 540 SAVLNQFQQQ QSMLSPINTN VFSPKNVEHP LLQASFGVSS PGRMSPRSVE PISXMSARLS 600 ALAQREKHYQ QLRSLSSRDL GSKNVSVIGS PVNSWTKFGG SPSGKVDWSV NGDEIGQMKR 660 SSSFEANNNG EEPDLSWVQS LVKESSPEMK DKLAAPLSGA APSGEGLKSS SQIDSIDHSV 720 LGAWLEQMQL DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MCVGPERSNS SSSSAAAQSP VDIKTNNTKD MNKLSVVTED CFSSLLELAA DNDVDGFKQM  60
VERDPSAIDG AGLWLVRKKG TKQIVREERT PLMVAAAYGS VDVLKLIVSL XEVDLNRACG  120
PDKCTALHCA TAGGAVNAVD VVKVLLSAGA DPTLRDANXL RPVDVIVVPP KLATAKLALE  180
ELLVNNPSDG SFGNCNLSIS VTTSNGSSPI LSSSPENGSP CSPSELVSSP ITSKFIGAPA  240
NSVSEKKEYP IDPXLPDIKN SIYATDEFRM FSFKVRPCXR AYSHDWTECP FVHPGENARR  300
RDPRKFHYSC VPCPDFRKGA CRRGDACEYA HGVFECWLHP AQYRTRLCKD GTSCSRRVCF  360
FAHTAEELRP LYVSTGSAVP XPRSAASAAG VMDMAAALNL LPGSPSSHPV MSPSAFNQPM  420
SPTANGMSHS SGAWTQPIVP ALHLPGSNLQ SSRLRSSLSA RDIPPAEFNM LQDFDAQQLV  480
LNDLACFSQS RPNSLSLNHS GRSKTLTPSN LEELFSAEMN SSPRYADPAA GGGVFSPSHK  540
SAVLNQFQQQ QSMLSPINTN VFSPKNVEHP LLQASFGVSS PGRMSPRSVE PISXMSARLS  600
ALAQREKHYQ QLRSLSSRDL GSKNVSVIGS PVNSWTKFGG SPSGKVDWSV NGDEIGQMKR  660
SSSFEANNNG EEPDLSWVQS LVKESSPEMK DKLAAPLSGA APSGEGLKSS SQIDSIDHSV  720
LGAWLEQMQL DQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein