PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027113709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 367aa MW: 40760.2 Da PI: 8.1408 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.1e-08 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ XP_027113709.1 35 ICTFYQK-GACAYGSRCRYEHV 55 7******.***********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence |
MSKKRVQCKF FAHGACLKGD HCEFLHDWNA PQNNICTFYQ KGACAYGSRC RYEHVKVSRP 60 LSSASSSSSS SSANPSQYLQ SKSILAAHPS GAPSVVIGHA SGVTADSSLA SRSMLPTTKP 120 AGGEMVRHED VSEFSDFGET KSQNPADQPI CSFAAAGHCP RGEMCPHIHG DLCPTCEKHC 180 LHPFRPQERE DHVKLCERRQ KNLDALKHSQ EIECSVCLER VLSKPTAAER KFGILSECDH 240 PFCISCIRNW RSSSPASGMD VNSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKA 300 KLRSIDCKHF DFGNGTCPFG TSCFYKHAYR DGRLEEVVLR HLGAEDGQTV IAKNIRLSDF 360 LSNFQIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-154 | C3H family protein |