PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113706.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 408aa    MW: 45539.4 Da    PI: 6.7941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-083555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f+++ G C yG+rC++ H+
  XP_027113706.1 35 ICTFYQK-GACAYGSRCRYEHV 55
                    7******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MSKKRVQCKF FAHGACLKGD HCEFLHDWNA PQNNICTFYQ KGACAYGSRC RYEHVKVSRP  60
LSSASSSSSS SSANPSQYLQ SKSILAAHPS GAPSVVIGHA SGVTADSSLA SRSMLPTTKP  120
AGGEMVRHED VSEFSDFGET KSQNPADQPI CSFAAAGHCP RGEMCPHIHG DLCPTCEKHC  180
LHPFRPQERE DHVKLCERRQ KNLDALKHSQ EIECSVCLER VLSKPTAAER KFGILSECDH  240
PFCISCIRNW RSSSPASGMD VNSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKA  300
KLRSIDCKHF DFGNGTCPFG TSCFYKHTVK PGSYLWNSTL MPDLYRTRFM DSDEEECLSE  360
TVNKNASLYL FEHFYSTHIS AGVEEDFSSE DSENEMAEEL AFMMMMGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-133C3H family protein