PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113677.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 525aa MW: 56579 Da PI: 7.2957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	453	498	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_027113677.1 453 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 498 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MPSIPFLGFT HISSSSLFPT KSSPNPEISL ISANILLLGL KISSNMYSPE AISRDISNNL 60 MFSSNTSSGA NSFRNGFLDG DFFKSSKEIL NSSSDLFQQP ASAAAAAHFQ QQNGGLMRYR 120 SAPSAYFASY LDSSKDNNNT TNTNTSGGSN TNGDSSESDS MFSAFLNEPT NESPYHHQRN 180 NPHQHQQQVQ PQGSCGAMKM EMNEVESNPS GMQQNRNGNG FCSSNSSSST MVSVGYQAAV 240 CAGGGTVVGS YTVPLGVENQ GQVRMNSNAN GSNLIRQSSS PAGFFSGFDA VGEVGNFRSG 300 NGTNGEASSS TGGLNNRLNF NSGPSSSSRF MPSIAENGNE NGGTGSSEHR QLGNGNETNQ 360 GYVSGFLNDT WNDSPFNSLK RNRDGDLKVY SSFNGLENQD GGPRNQTPGL IHHLSLPKTA 420 GEMAAIEKYM QFQQDSVPCK IRAKRGCATH PRSIAERMRR TRISERMKKL QELFPNMDKQ 480 TNTADMLDLA VEYIKDLQNQ VQTLTETRAK CICSSKQPQC SHPAV

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MPSIPFLGFT HISSSSLFPT KSSPNPEISL ISANILLLGL KISSNMYSPE AISRDISNNL  60
MFSSNTSSGA NSFRNGFLDG DFFKSSKEIL NSSSDLFQQP ASAAAAAHFQ QQNGGLMRYR  120
SAPSAYFASY LDSSKDNNNT TNTNTSGGSN TNGDSSESDS MFSAFLNEPT NESPYHHQRN  180
NPHQHQQQVQ PQGSCGAMKM EMNEVESNPS GMQQNRNGNG FCSSNSSSST MVSVGYQAAV  240
CAGGGTVVGS YTVPLGVENQ GQVRMNSNAN GSNLIRQSSS PAGFFSGFDA VGEVGNFRSG  300
NGTNGEASSS TGGLNNRLNF NSGPSSSSRF MPSIAENGNE NGGTGSSEHR QLGNGNETNQ  360
GYVSGFLNDT WNDSPFNSLK RNRDGDLKVY SSFNGLENQD GGPRNQTPGL IHHLSLPKTA  420
GEMAAIEKYM QFQQDSVPCK IRAKRGCATH PRSIAERMRR TRISERMKKL QELFPNMDKQ  480
TNTADMLDLA VEYIKDLQNQ VQTLTETRAK CICSSKQPQC SHPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-56	bHLH family protein