PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113605.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 443aa    MW: 50149.4 Da    PI: 8.3078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021385405223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cgk+F  ++ L+ H++++
  XP_027113605.1 385 PCSQCGKPF-KPEKLHAHMKSC 405
                     5********.**********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MEAIYLEQKR NMKRRLMESN QVGAEVRRIH VIYFLSRKGR IEQPHLIRVH HLSRNGVHLR  60
DVKRWLGELR GKDMPESFSW SYKRRYKSGY VWQDLLDEDL ITPISDNEYV LKGSEISSTA  120
TIEDSPSEKR YSMHKEEEDS SDRIPSSTEE NPDDDHHHQE TKMDQPTKIF SPEIEEESPT  180
FGSEQSSTLT DDSMKTKDQD QDQEKNSSFQ TPKEEMHEES DKSEGSSYYS PLSSKRNKKA  240
NNVMSEEKIS APSSSASTSS TAQPSFSKSR SYSNASHLFR NLITCGAVET NDSVMLTISR  300
RNKPPANANL SSLDKQNHVS NGTKELLQKG DKLGGSQRIF GTNWDQQRQS SGRKSFDGVR  360
ASQKNNSEFN NQKTNAAHKP IYGPPCSQCG KPFKPEKLHA HMKSCRGMKA WAKYSGPAIS  420
AAAADKPAES PQENLVSGYY LTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916KRNMKRRL