PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113402.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 234aa MW: 26512 Da PI: 8.3094

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.3	1.4e-32	160	218	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ XP_027113402.1 160 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHS 218 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MEGERSASGL HLNPNYELPP SFSAPHPIPE MGFVQFEDHH QVLSFLAPSS QSSHISSQTL 60 HGGGENNHTN SSTTSNHNGS FGFRHNELVA TSTRPSWNND QVGSLNPKAV GDQNCATNNA 120 NEGTNSWWRS SASEKGKVKV RRKLREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP 180 RSYYRCTHNN CRVKKRVERL SEDCRMVITT YEGRHNHSPC DDSNSSEHEC FTSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	KVRRKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	2e-69	WRKY family protein