PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113325.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 296aa    MW: 32303.4 Da    PI: 8.2679
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-3271127259
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     + vrY+eClkNhAa++Gg+a+DGCgEfmps geegt +al+C+AC+CHRnFHR+eve 
  XP_027113325.1  71 KMVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTLEALTCSACNCHRNFHRKEVEG 127
                     679**************************9.999*********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MELPSQEGEM PIPLNSTYGG GHGHTSHGHG HMIHHDPVPS AHNHMIPSSA PQMPSNGPIS  60
SSLEEHVPFK KMVRYRECLK NHAAAMGGNA TDGCGEFMPS GEEGTLEALT CSACNCHRNF  120
HRKEVEGEPS SCDCFHSPHP NRVGRKVIVG HHHKSLLGPE SLGYPTGALI ASRAAPPHPM  180
IMSYNMGSLP SESDEQDEAG GGGGGGGIVS ARPPHQLVKK RFRTKFTPEQ KEKMLNFAEK  240
VGWKIQKQEE AVVQQFCQEV GVKRRVLKVW MHNNKHSLAK KNNNASSNNI NPHNQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.19e-74ZF-HD family protein