PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113307.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 661aa MW: 73334.7 Da PI: 6.2612

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.6	4.8e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_027113307.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_027113307.1 218 SGELRVGVRR 227 999***97 PP
2	Auxin_resp	114.1	1.3e-37	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm fe+e+++err+sGt+vgv + ++rWp+S+WrsLk XP_027113307.1 253 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMTFEGEEVPERRFSGTIVGVGENTSSRWPDSQWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MAHVAANHFS GGPNPGSPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTL 60 QGLDHQLPSF NLPPKILCKV MNVNLRAEAE TDEVYAQITL LPDLDQGEVT SPDPPLPEPE 120 RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGESGE LRVGVRRLMR QPSNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK LSVGMRFKMT 300 FEGEEVPERR FSGTIVGVGE NTSSRWPDSQ WRSLKVQWDE PSSIVRPDRV SPWEIEPLVA 360 ATPPNPLPPQ RNKRARPPVL PLAMQDLSSL GVWKSSVEPL YCDTSRSHDF YPSPKLSAAT 420 KASNLGYSDI KSMFWSNQVE TATESVAPVT EKRQVNGYRL FGIELLERAT VEDTSAVVAS 480 GAVEGDQPHL SRDSGSDQLS EPSHPNRSDV PSVSCDPEKS CLRSPHESQS RQIRSCTKVH 540 MQGIAVGRAV DLTRFEGYDD LLKKLEEMFE IDGELFGSTK KWQVVYADDE DDMMMVGDDP 600 WHEFCGMVRK IYIYTSEEAK KLSPKIKLPV GEVKSSKAAT DVVALGTEEQ SSNVGSGGHS 660 C

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MAHVAANHFS GGPNPGSPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTL  60
QGLDHQLPSF NLPPKILCKV MNVNLRAEAE TDEVYAQITL LPDLDQGEVT SPDPPLPEPE  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGESGE LRVGVRRLMR QPSNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK LSVGMRFKMT  300
FEGEEVPERR FSGTIVGVGE NTSSRWPDSQ WRSLKVQWDE PSSIVRPDRV SPWEIEPLVA  360
ATPPNPLPPQ RNKRARPPVL PLAMQDLSSL GVWKSSVEPL YCDTSRSHDF YPSPKLSAAT  420
KASNLGYSDI KSMFWSNQVE TATESVAPVT EKRQVNGYRL FGIELLERAT VEDTSAVVAS  480
GAVEGDQPHL SRDSGSDQLS EPSHPNRSDV PSVSCDPEKS CLRSPHESQS RQIRSCTKVH  540
MQGIAVGRAV DLTRFEGYDD LLKKLEEMFE IDGELFGSTK KWQVVYADDE DDMMMVGDDP  600
WHEFCGMVRK IYIYTSEEAK KLSPKIKLPV GEVKSSKAAT DVVALGTEEQ SSNVGSGGHS  660
C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein