PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113299.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 615aa    MW: 72972.4 Da    PI: 8.8164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-0994121126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++   tC++G  C+F+H+
  XP_027113299.1  94 WKVAICGEYMKSKlkTCSRGTACNFIHC 121
                     899************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    
MAALCCSRLL KNHYTEEEVE RSYEEFYEDV HTEFLKFGEI VNFKVCRNGS YHLRGNVYVH  60
YRELDSAVLA RRFINGRYFA GKQVNCEFVG VTRWKVAICG EYMKSKLKTC SRGTACNFIH  120
CFRNPGGDYE WADWEKPPPK YWVKRMAALF GYSHESGYDK WVEQETKGQR RNSSKSLIAD  180
EERYRSRRSL SREIKSSNSS PRDNYKEDKF RRSKYSKRYR SDDTKRLEVP DEREYEEERQ  240
SRSHQRGKRG QYEREFDRAW LDEEKDADGY YYSTRNTRES SRSPFRRRSQ SHDCREIDKR  300
KIPEKISRKN HALSGTANDS DCNKEASAYT DSGRDFSHEN KDCISSRDLL YRRGASDSDS  360
AGDWSDWIIE SRRVQTRKSS ARVDEAAGFS SDLQESGKSL HDKYDENGSE HAKPNLQRGW  420
RRTSSCKRKT RGDDYSDEDE DSDTRGRREI DKDDTREHHR HNHSSRKTRK ADYADYADEN  480
IDERGHLETE KVDSREHHKH NRSGRKTSKA DYADKHDEDI DKRGCWEPEM VDAREYHKHN  540
HSSRKTRKCD YAGEHHEDID KGGHWEPEKL DTREHHEHRR KSHGRSGSHD QNVDKHSRKS  600
RSSNQKRKSY SRERD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.18e-76C3H family protein