PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027113207.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 538aa    MW: 56717.3 Da    PI: 7.3948
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027113207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.1e-401432523118
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+ +  + s +ss+s         sa++
  XP_027113207.1 143 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANIStLNISVRSSGS-------TLSAPP 230
                     6799****************************************************************88855555555555.......333335 PP

             TCP  97 skksqksaasalnlakesraka 118
                     sk++++s +sal+la++  ++ 
  XP_027113207.1 231 SKSAPHSFHSALALAHHPYEEG 252
                     5666666666666666554444 PP

Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MELTDLQQHQ TNKQTNANNT NTSSTTTTCT TSQSYHFSPF HLHHHHHQQQ HGRSAPFIAS  60
ISIPPPAALT SSVAGATSTT CAAAAGGNRT PSSASPSTPS TSASPSSAAV DASLAIATRS  120
ETLIDPSKKP PQQQQEAAQQ QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG  180
HKSDGETIEW LLQQAEPAII ATTGTGTIPA NISTLNISVR SSGSTLSAPP SKSAPHSFHS  240
ALALAHHPYE EGFSHMLGFQ QQQQHLLAAN QMTEAIPSGD GGGDSGGGGG QDATESYLRK  300
RYREDLFKEE GSSGRQGDGA DETSPSPPNK QFKVGGGGGG MQIPKTQDVG GPSSGMLRHA  360
NMIPATAMWA VAPAPNSGGA TGSAFWMLPV TAGGSSQTIL AATSGGAVQQ QPTEQQHHHH  420
QMWPFPSSSG NTLQAPLHFM PRFNIPAGNL ETFQGGRASP LQLGSMLMQQ QQQQHPSQHL  480
GLGMSESNLG MLAALNAYSR GVGNLNMNSD HQNHPMDHQQ QHQPQPTDSG EDGPNSSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-47TCP family protein