PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027113207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | TCP | ||||||||
Protein Properties | Length: 538aa MW: 56717.3 Da PI: 7.3948 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.6 | 6.1e-40 | 143 | 252 | 3 | 118 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+ + + s +ss+s sa++ XP_027113207.1 143 PPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANIStLNISVRSSGS-------TLSAPP 230 6799****************************************************************88855555555555.......333335 PP TCP 97 skksqksaasalnlakesraka 118 sk++++s +sal+la++ ++ XP_027113207.1 231 SKSAPHSFHSALALAHHPYEEG 252 5666666666666666554444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence |
MELTDLQQHQ TNKQTNANNT NTSSTTTTCT TSQSYHFSPF HLHHHHHQQQ HGRSAPFIAS 60 ISIPPPAALT SSVAGATSTT CAAAAGGNRT PSSASPSTPS TSASPSSAAV DASLAIATRS 120 ETLIDPSKKP PQQQQEAAQQ QQPPKRSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG 180 HKSDGETIEW LLQQAEPAII ATTGTGTIPA NISTLNISVR SSGSTLSAPP SKSAPHSFHS 240 ALALAHHPYE EGFSHMLGFQ QQQQHLLAAN QMTEAIPSGD GGGDSGGGGG QDATESYLRK 300 RYREDLFKEE GSSGRQGDGA DETSPSPPNK QFKVGGGGGG MQIPKTQDVG GPSSGMLRHA 360 NMIPATAMWA VAPAPNSGGA TGSAFWMLPV TAGGSSQTIL AATSGGAVQQ QPTEQQHHHH 420 QMWPFPSSSG NTLQAPLHFM PRFNIPAGNL ETFQGGRASP LQLGSMLMQQ QQQQHPSQHL 480 GLGMSESNLG MLAALNAYSR GVGNLNMNSD HQNHPMDHQQ QHQPQPTDSG EDGPNSSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-47 | TCP family protein |