PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113142.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 532aa MW: 59892.5 Da PI: 7.6245

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	339	382	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+riN+++ +Lr+l+P+ + K++Ka++L A +YI++Lq XP_027113142.1 339 ITERNRRHRINHGLLTLRSLVPNiS------KMDKASTLADAYDYIQELQ 382 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MLQQQKGTKS SCSSKTIRGT SQQGQAPDRY KEVFERFKDM AALDQALERL RVLVKNNVWD 60 YCIVWKLGDD PSSFIEWRGC CCSGGNWLEN VKEESGKDQY LFAQCRDGHF KHPIRTKACE 120 KLAKFPLSIP LYSGIHGEVV MSNRARWHVN SNNTSSDEAI GTQVLVPVAG GLIELFSTNL 180 VQETQQIIDF ILAQYVPVEL ETMASHRRTE LNAAEPSHRP FLDDCFNNLP ASVCHMISVP 240 NLQYPTFIPN SSNHPSFEGS SISSDLPKDY QLLNVCSGSA SCSTSPEKSS GRHPGNLDSR 300 RMKDPSCGFG SAKWAAETNE NLRGRNKTER DNYHSKNLIT ERNRRHRINH GLLTLRSLVP 360 NISKMDKAST LADAYDYIQE LQKSVEEYQG KLRDLAEQEA NMYSSEQEVP RSCREIQRTD 420 YQPTIEQGDS RRHSSTNDKK QGKVKIEVSQ IGTRDFLVKI ICTQKRGCFL RLMQAMDSFG 480 LQVTDANVTT SNGLVLNVLK AEAFSEEIQA TTLKNSLMEL FLQDGQGKIQ LA

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MLQQQKGTKS SCSSKTIRGT SQQGQAPDRY KEVFERFKDM AALDQALERL RVLVKNNVWD  60
YCIVWKLGDD PSSFIEWRGC CCSGGNWLEN VKEESGKDQY LFAQCRDGHF KHPIRTKACE  120
KLAKFPLSIP LYSGIHGEVV MSNRARWHVN SNNTSSDEAI GTQVLVPVAG GLIELFSTNL  180
VQETQQIIDF ILAQYVPVEL ETMASHRRTE LNAAEPSHRP FLDDCFNNLP ASVCHMISVP  240
NLQYPTFIPN SSNHPSFEGS SISSDLPKDY QLLNVCSGSA SCSTSPEKSS GRHPGNLDSR  300
RMKDPSCGFG SAKWAAETNE NLRGRNKTER DNYHSKNLIT ERNRRHRINH GLLTLRSLVP  360
NISKMDKAST LADAYDYIQE LQKSVEEYQG KLRDLAEQEA NMYSSEQEVP RSCREIQRTD  420
YQPTIEQGDS RRHSSTNDKK QGKVKIEVSQ IGTRDFLVKI ICTQKRGCFL RLMQAMDSFG  480
LQVTDANVTT SNGLVLNVLK AEAFSEEIQA TTLKNSLMEL FLQDGQGKIQ LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-68	bHLH family protein