PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112996.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 819aa    MW: 88148.1 Da    PI: 6.2298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.71.7e-1024608182374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                     +++L+++Ae v++g+  laq +Larl+++ sp g+p+qR+a+y +eAL+  l+       + l+p +++++    + ++ a+k fse+sP+++f+
  XP_027112996.1 460 IDQLYKAAELVQTGNPLLAQGILARLNHQLSPIGKPFQRAAFYCKEALQLLLHT------NNLNPCTANSSPfsLIFKIGAYKSFSEISPVVQFA 548
                     689**************************************************9......344333333333349******************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     ++t+ qa+le +eg +r+HiiDfdi++G+QW++++q+La R++g+pslRiT+++sp+++++ el  ++e+L +fA+e+++ fef+++  ++l++ 
  XP_027112996.1 549 NFTCIQALLEVLEGFDRIHIIDFDIGYGGQWASFMQELALRSGGAPSLRITAFASPSTHDQLELGLMQENLMHFASEINMAFEFEIVSIDSLNSA 643
                     **************************************************************************************988888888 PP

            GRAS 190 ele.eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     + +  L+v+++Ea+aVnl ++ ++    +++l    + +L++vk+lsPk+vv v++ +++++ +F +++++al+ ys l++sl+a    + +  +
  XP_027112996.1 644 SWSlPLHVSENEAIAVNLPVSSFSSC--QLPL----SLILRFVKQLSPKIVVSVDRGCNRTDLPFPNHVIHALQSYSNLLESLDAV-NVNLDSLQ 731
                     6653589*************888887..4444....45*********************************************665.34668889 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     k+Er+ll++ i+ ++  +  +     e+ ++Wr  + ++GF+p+++s+++++qa++++++++++g++ve+++ +lvl+W++++L+s+SaWr
  XP_027112996.1 732 KIERFLLQPGIERILLGRYHS----PEKTQHWRTLFLSSGFSPLTFSNFTESQAECVVKRTPVRGFHVEKRQSALVLCWQRKELISASAWR 818
                     ****************99998....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MKGMPLPFDF QGKGVLDLDL QFVSSSSSSS SSSFWNYKNA SNCKANCLLN RNTSISSDSE  60
PTSVLDNIRS QSPPTSSSTL SSSLGGGGGG GGGGGPNKNS GGAVAGGGGG ASTDTTGVAA  120
VSGNSSIKWH QDAPSTTTSS NVAAESELQP VPPSLEMGGG GTTAAEEWES VLPESVAASP  180
SQEQSILRWI MGDVDDPSMA NLNKVLQIGG GPAAADDEFN PGFGVVDQGF GADPVGQVTN  240
FLPPMNTSLP MASSASLSSN RVNGEKIGLL ANSSGSPAVN KLSNPQNSIF PALSSNLGVP  300
IAFNQGQQHV IQQTPTAAFE CAEMKPPIFN PQMLINQHQA QHPQNPSFFM PLAYGQQEQN  360
LLMPPQSKRH NPGPIGGTDP GFQISKAPFS DTGQELFAGR QQPHQQQQAL PQGLSHQLQL  420
LPHYLQQRPA ATSPKQKMIG DEMGHSHQQQ QQQQQQQAII DQLYKAAELV QTGNPLLAQG  480
ILARLNHQLS PIGKPFQRAA FYCKEALQLL LHTNNLNPCT ANSSPFSLIF KIGAYKSFSE  540
ISPVVQFANF TCIQALLEVL EGFDRIHIID FDIGYGGQWA SFMQELALRS GGAPSLRITA  600
FASPSTHDQL ELGLMQENLM HFASEINMAF EFEIVSIDSL NSASWSLPLH VSENEAIAVN  660
LPVSSFSSCQ LPLSLILRFV KQLSPKIVVS VDRGCNRTDL PFPNHVIHAL QSYSNLLESL  720
DAVNVNLDSL QKIERFLLQP GIERILLGRY HSPEKTQHWR TLFLSSGFSP LTFSNFTESQ  780
AECVVKRTPV RGFHVEKRQS ALVLCWQRKE LISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-148GRAS family protein