PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112969.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 449aa MW: 48890.4 Da PI: 8.0823

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	208	285	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh+++efDe+krsCrrrLa+hnerrrk+++ XP_027112969.1 208 RCQVDGCHVALLNAKDYHRRHKVCEQHSKAPKVVVLGLEQRFCQQCSRFHAVEEFDESKRSCRRRLAGHNERRRKSSQ 285 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MENGWDLFNI TTNNNLIGKT HHHNNSSNSS NNNNNTNCTS DRNNARAMWD SGTIATPKID 60 WNTNNLDKSS SFFNLDNTPA PTAATVIASQ QEEKGAVHAL MFDNVSSSPF PSCLYGRGGG 120 GGGSHPQCCY PDPHLMCLKL GKRHYFGDAA APLGDRQGAA AGGFSMTTKR GKPYYDAAAG 180 LLVGPSTMTA AAAAAGVTVA VTPAVVPRCQ VDGCHVALLN AKDYHRRHKV CEQHSKAPKV 240 VVLGLEQRFC QQCSRFHAVE EFDESKRSCR RRLAGHNERR RKSSQDQSAP RNQTQVNGKL 300 MTCSGRYPYY PISSGCALSL LSSKNDSWIS SADLPARCSA ALHELIAENR AAILARQLIV 360 DKEWHWHNHP TEDLNSARQN GSNAFANYQQ LMATGSHSWD RINEAGEHVT LDLMQAPDSA 420 FSFLSMRGKS KEDEECPGLW GSFGGAHVV

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MENGWDLFNI TTNNNLIGKT HHHNNSSNSS NNNNNTNCTS DRNNARAMWD SGTIATPKID  60
WNTNNLDKSS SFFNLDNTPA PTAATVIASQ QEEKGAVHAL MFDNVSSSPF PSCLYGRGGG  120
GGGSHPQCCY PDPHLMCLKL GKRHYFGDAA APLGDRQGAA AGGFSMTTKR GKPYYDAAAG  180
LLVGPSTMTA AAAAAGVTVA VTPAVVPRCQ VDGCHVALLN AKDYHRRHKV CEQHSKAPKV  240
VVLGLEQRFC QQCSRFHAVE EFDESKRSCR RRLAGHNERR RKSSQDQSAP RNQTQVNGKL  300
MTCSGRYPYY PISSGCALSL LSSKNDSWIS SADLPARCSA ALHELIAENR AAILARQLIV  360
DKEWHWHNHP TEDLNSARQN GSNAFANYQQ LMATGSHSWD RINEAGEHVT LDLMQAPDSA  420
FSFLSMRGKS KEDEECPGLW GSFGGAHVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	6e-35	SBP family protein