PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112957.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 447aa MW: 48150.6 Da PI: 8.7037

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.7e-16	271	317	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_027112957.1 271 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 317 6***********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDWAEVFCRL DYEVAELTWE NGQLAMHGLG LPRLPNGKSL AASPPAKYNS WEKQPPVGGT 60 LESIVNPAAI IATHRKSAAQ SGCRDCGDEL VPWFEDHRRA ARAPAAASLA LTMDALVPCN 120 NSTRNDHREP STHVPKISAC PVGCSSTCVG SCSAAAGNAR LRRMNAAAAA APMEWGSKAD 180 QSASGSATCG RDSRQVTLDT CDREFGTAAY TSTSFGSPEN TSSGKQCTKT VDDQDSPCQS 240 RYEREAGNEE QKKKGNGKSS VSTKRSRAAA VHNQSERKRR DKINQRMKTL QKLVPNSSKT 300 DKASMLDEVI EYLKQLQAQV NIMSRMNMSP MMLPLALQQQ LQMSMMASMG MGMNMGMGMG 360 VMDLNSIGRS NIAGLPPLLH PNAYMPATSA WDGLAGRLAA STSQAMPDPL AAFLTCQSQP 420 MTMDAYSRMA ALYQQFQQPP GPASKNK

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDWAEVFCRL DYEVAELTWE NGQLAMHGLG LPRLPNGKSL AASPPAKYNS WEKQPPVGGT  60
LESIVNPAAI IATHRKSAAQ SGCRDCGDEL VPWFEDHRRA ARAPAAASLA LTMDALVPCN  120
NSTRNDHREP STHVPKISAC PVGCSSTCVG SCSAAAGNAR LRRMNAAAAA APMEWGSKAD  180
QSASGSATCG RDSRQVTLDT CDREFGTAAY TSTSFGSPEN TSSGKQCTKT VDDQDSPCQS  240
RYEREAGNEE QKKKGNGKSS VSTKRSRAAA VHNQSERKRR DKINQRMKTL QKLVPNSSKT  300
DKASMLDEVI EYLKQLQAQV NIMSRMNMSP MMLPLALQQQ LQMSMMASMG MGMNMGMGMG  360
VMDLNSIGRS NIAGLPPLLH PNAYMPATSA WDGLAGRLAA STSQAMPDPL AAFLTCQSQP  420
MTMDAYSRMA ALYQQFQQPP GPASKNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	ERKRRD
2	277	282	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-72	bHLH family protein