PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112909.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 339aa    MW: 36298.3 Da    PI: 8.9649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.3e-07219239627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++++  G C yG +C+F H++
  XP_027112909.1 219 CKTYSS-GSCAYGTKCRFVHDQ 239
                     999999.*************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MENLYGGAGN SSSTRTPKLN SINGNVSPLN LNTPNFNGRG SYQHHHLRQS KSPVFDPYAS  60
SDSGSASPNL DSPLIRYLRS SSSSSGGKLL SPLASIENFD TPASRSSPVF KTPLNIEEDV  120
LVMDGILVDS SNIKTPKGGG VARMRSPLAP LDSDGRQPSS LSSSLSSGGS ENSFYKTEKC  180
RSSEDSNAGR FGTKCQFAHG KEELRSSRIS KNKLEAQFCK TYSSGSCAYG TKCRFVHDQI  240
KAAVPSMEPS PTSKVLPTPR RAISPITLQN KADFGEKNAF TAFSTDDWSA LDDGIGVTLP  300
SGSSEKTPSK EDVNAHIQAA LYGPSPRKRL PVFTEFCPD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-07C3H family protein