PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112768.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 204aa MW: 23665.2 Da PI: 9.8897

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifs tgkly+y+s XP_027112768.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSGTGKLYDYAS 59 8***********************************************86 PP
2	K-box	83.4	4.9e-28	83	171	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+a L+++++ Lq ++R+llGe+L Ls+++L qLe+qLe slk +R kK+++l+++i++l +k + l+een +L +k+ XP_027112768.1 83 PASEIKFWQREVASLRQQLHYLQDTHRKLLGEELFGLSVNDLVQLENQLEVSLKGVRVKKEQVLTDEIKQLHRKGNHLHEENIELYNKV 171 568899*******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSG TGKLYDYAST 60 SSMKSIIERY NRMKEEHHRL LNPASEIKFW QREVASLRQQ LHYLQDTHRK LLGEELFGLS 120 VNDLVQLENQ LEVSLKGVRV KKEQVLTDEI KQLHRKGNHL HEENIELYNK VNLIHQENIQ 180 LQKKVQEQEN INKSPAKPAA CTEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	2e-92	MIKC_MADS family protein