PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027112765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27778.9 Da PI: 9.9352 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.7e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifs tgkly+y+s XP_027112765.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSGTGKLYDYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 83.1 | 6.2e-28 | 83 | 171 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+a L+++++ Lq ++R+llGe+L Ls+++L qLe+qLe slk +R kK+++l+++i++l +k + l+een +L +k+ XP_027112765.1 83 PASEIKFWQREVASLRQQLHYLQDTHRKLLGEELFGLSVNDLVQLENQLEVSLKGVRVKKEQVLTDEIKQLHRKGNHLHEENIELYNKV 171 578899*******************************************************************************9997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSG TGKLYDYAST 60 SSMKSIIERY NRMKEEHHRL LNPASEIKFW QREVASLRQQ LHYLQDTHRK LLGEELFGLS 120 VNDLVQLENQ LEVSLKGVRV KKEQVLTDEI KQLHRKGNHL HEENIELYNK VNLIHQENIQ 180 LQKKVQEQEN INKSHGSICT TNVTSNMNEL HVPMNLQLSQ PHAQKNEAPK NPMKLGLELY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-95 | MIKC_MADS family protein |