PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112765.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27778.9 Da    PI: 9.9352
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifs tgkly+y+s
  XP_027112765.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSGTGKLYDYAS 59
                    8***********************************************86 PP

2K-box83.16.2e-28831711098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++ + +q+e+a L+++++ Lq ++R+llGe+L  Ls+++L qLe+qLe slk +R kK+++l+++i++l +k + l+een +L +k+
  XP_027112765.1  83 PASEIKFWQREVASLRQQLHYLQDTHRKLLGEELFGLSVNDLVQLENQLEVSLKGVRVKKEQVLTDEIKQLHRKGNHLHEENIELYNKV 171
                     578899*******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSG TGKLYDYAST  60
SSMKSIIERY NRMKEEHHRL LNPASEIKFW QREVASLRQQ LHYLQDTHRK LLGEELFGLS  120
VNDLVQLENQ LEVSLKGVRV KKEQVLTDEI KQLHRKGNHL HEENIELYNK VNLIHQENIQ  180
LQKKVQEQEN INKSHGSICT TNVTSNMNEL HVPMNLQLSQ PHAQKNEAPK NPMKLGLELY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-95MIKC_MADS family protein