PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112469.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 319aa MW: 36228.6 Da PI: 9.3295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.4	5.6e-18	111	200	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ps+v+ s +l++p+kf + h + ++ t++l de+g++++ ++ +++++ l++GW++F +++L gD+++F+l+g+ + +v+ XP_027112469.1 111 FLKCMLPSNVTYSFWLIIPRKFGSLHL-P-SQDSTVILVDEWGKEYKTTYLIDRNG----LSAGWRGFSMSHRLLKGDILIFRLIGHCKL--KVH 197 89*******************8884.3.35569***********888888....***********************96666..787 PP EE- CS B3 96 vfr 98 ++r XP_027112469.1 198 IVR 200 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MEAEKLIGEQ QNQKEHRTQN CIENEQTSVK RRRKKKDEMP MEKKKKVIAG NPKAPKSKSK 60 KVDSDTGKNS RCIKRKRTGM NEIYDDVESK FTVMERAAKV LASMEDGAPY FLKCMLPSNV 120 TYSFWLIIPR KFGSLHLPSQ DSTVILVDEW GKEYKTTYLI DRNGLSAGWR GFSMSHRLLK 180 GDILIFRLIG HCKLKVHIVR VHGLDVVNAA ACLMNLDAFG TMDSDPVKQD YRKRKRTKKY 240 ADCSVFDAPR IPDKVQEKGK MVLKSDLVPV EDQSENTSDG FGSEVLEGSG MTDHLLSGDH 300 HHTEASFLHE HPCEGVVCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	36	KRRRKKK
2	30	46	KRRRKKKDEMPMEKKKK
3	30	60	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK
4	31	47	KRRRKKKDEMPMEKKKK
5	31	61	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK
6	31	37	RRRKKKD
7	32	48	KRRRKKKDEMPMEKKKK
8	32	62	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK
9	32	38	RRRKKKD
10	33	63	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK
11	232	262	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK
12	232	239	RKRKRTKK
13	233	263	KRRRKKKDEMPMEKKKKVIAGNPKAPKSKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-30	B3 family protein