PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112468.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 844aa MW: 92408.6 Da PI: 6.7962

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	314	413	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_027112468.1 314 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGQ 406 99************************666667778***********99899999999.*******************887.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_027112468.1 407 LVMGFRK 413 6666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MGSKICMNEV CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC 60 KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF 120 DSLLQLCNNV DVNGSKKMFK PHKVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS 180 MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ 240 QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ 300 QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE 360 WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET 420 QTQDPQPSGL PNGGSPGETS YLGASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN 480 IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD QEPPIFGKRT 540 IFTVQPSGQQ EQWAQCDNCS KWRRLPMHVL VPARWTCPDN AWVLNSTCSA PDDINPRELE 600 ALNIASKDFK RRRIVEAKVA EDYEPSGLDA LATAAVLGDN MGDLTEMSVG ATTKHPRHRP 660 GCSCIVCIQP PSGKGKHPPS CKCNVCLTVK RRFKTLMMRK KKRQSDREAE LLQGKDQETP 720 PLDMSEMEGA AEQALLLTNH SDAERSQNGS LMEAGESNKG QLDLNCHPSR EEDMLAEAAA 780 GINLATLIDA ASIPLDVYMR QDGVASLSHH LLPSHAPGDG EGSLPEEGCS ASANMGPEKK 840 GKEE

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MGSKICMNEV CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC  60
KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF  120
DSLLQLCNNV DVNGSKKMFK PHKVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS  180
MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ  240
QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ  300
QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE  360
WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET  420
QTQDPQPSGL PNGGSPGETS YLGASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN  480
IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD QEPPIFGKRT  540
IFTVQPSGQQ EQWAQCDNCS KWRRLPMHVL VPARWTCPDN AWVLNSTCSA PDDINPRELE  600
ALNIASKDFK RRRIVEAKVA EDYEPSGLDA LATAAVLGDN MGDLTEMSVG ATTKHPRHRP  660
GCSCIVCIQP PSGKGKHPPS CKCNVCLTVK RRFKTLMMRK KKRQSDREAE LLQGKDQETP  720
PLDMSEMEGA AEQALLLTNH SDAERSQNGS LMEAGESNKG QLDLNCHPSR EEDMLAEAAA  780
GINLATLIDA ASIPLDVYMR QDGVASLSHH LLPSHAPGDG EGSLPEEGCS ASANMGPEKK  840
GKEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	610	614	KRRRI
2	690	701	KRRFKTLMMRKK
3	690	703	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein