PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112425.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 430aa MW: 47581.5 Da PI: 6.6291

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	286	341	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGG + AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_027112425.1 286 KQRRCWSPELHRRFVDALQKLGGCQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 341 79****************************************************97 PP
2	Myb_DNA-binding	46.9	6.6e-15	288	339	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++vda ++lGg t+k I + m+ g+t ++ks++qky+ XP_027112425.1 288 RRCWSPELHRRFVDALQKLGGCqaaTPKQIRELMQvDGLTNDEVKSHLQKYR 339 568************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGSIPPELSL DFRPPSTRTV TTTTVTAAAS EEQSCCYVPK TIDELVGQVS MIGNVAEKLL 60 KLDDYVTKLE DEMKKIDAFK RELPLCMLLL NDAIRTLKEE STKYKAMDAG PVLEEFIPLK 120 KNCDEDEKSE MVVETSKKDK DSREKMSWMS SVQLWNSDNP ASKSDFDINE AQSRPETKKR 180 VVEAEIQEDL FESCKNGSVA RAFVPFQGCS SLPVMITRKE NEYELPGVVP GLSLQTPGTK 240 KLKEDIGSGG LNSRVGGSRA VSCSVSSVQS NVRAAVSQQQ QQTSRKQRRC WSPELHRRFV 300 DALQKLGGCQ AATPKQIREL MQVDGLTNDE VKSHLQKYRL HTRRLPTTTG TSTNQPVVVL 360 GALWLPQDQH GESSKQSNSH SGSPQGPLQL GGASRGTSMT GGDSMEDEED DKSESHSWKS 420 HIRTSQRTNV

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGSIPPELSL DFRPPSTRTV TTTTVTAAAS EEQSCCYVPK TIDELVGQVS MIGNVAEKLL  60
KLDDYVTKLE DEMKKIDAFK RELPLCMLLL NDAIRTLKEE STKYKAMDAG PVLEEFIPLK  120
KNCDEDEKSE MVVETSKKDK DSREKMSWMS SVQLWNSDNP ASKSDFDINE AQSRPETKKR  180
VVEAEIQEDL FESCKNGSVA RAFVPFQGCS SLPVMITRKE NEYELPGVVP GLSLQTPGTK  240
KLKEDIGSGG LNSRVGGSRA VSCSVSSVQS NVRAAVSQQQ QQTSRKQRRC WSPELHRRFV  300
DALQKLGGCQ AATPKQIREL MQVDGLTNDE VKSHLQKYRL HTRRLPTTTG TSTNQPVVVL  360
GALWLPQDQH GESSKQSNSH SGSPQGPLQL GGASRGTSMT GGDSMEDEED DKSESHSWKS  420
HIRTSQRTNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-45	G2-like family protein