PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112244.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 425aa MW: 47109.7 Da PI: 6.6468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	264	311	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027112244.1 264 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 311 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MLDPLNTPAN FNRDGGFDRM SVLERQEAIW MKWQEEQLHH PPPLPLQVRQ LGHDFFNSTD 60 QLNVFSSPAQ AHQHFHGFIT NDHHFSGLLT PGILKQDPDV QTTTGCDNFT NIGGPSAGVG 120 ACELENITGF GMDYAVSRTV SCPPAMAAAM ADVAAAASKG RETTLPEKLS SSAGRESFKK 180 RKADKTQNQK EATEQEGKDK RSRGCQKEED SKVTEQKSTS KNTATNNTIN REASETSKEN 240 SKISEVQKPD YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC NKITGKAGML 300 DEIINYVQSL QRQVEFLSMK LAAINPRLDF NIDNISTKEQ VVSCCGLETG ADPSEMALRR 360 TISAPVSIHE TLRESPYFSQ IHPSTTWDAE LQSLYALEFQ QGKSTSLLSQ PCTGYLGGSN 420 VKMEI

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MLDPLNTPAN FNRDGGFDRM SVLERQEAIW MKWQEEQLHH PPPLPLQVRQ LGHDFFNSTD  60
QLNVFSSPAQ AHQHFHGFIT NDHHFSGLLT PGILKQDPDV QTTTGCDNFT NIGGPSAGVG  120
ACELENITGF GMDYAVSRTV SCPPAMAAAM ADVAAAASKG RETTLPEKLS SSAGRESFKK  180
RKADKTQNQK EATEQEGKDK RSRGCQKEED SKVTEQKSTS KNTATNNTIN REASETSKEN  240
SKISEVQKPD YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC NKITGKAGML  300
DEIINYVQSL QRQVEFLSMK LAAINPRLDF NIDNISTKEQ VVSCCGLETG ADPSEMALRR  360
TISAPVSIHE TLRESPYFSQ IHPSTTWDAE LQSLYALEFQ QGKSTSLLSQ PCTGYLGGSN  420
VKMEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	8e-57	bHLH family protein