PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112243.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 436aa MW: 48224 Da PI: 6.4502

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	245	292	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027112243.1 245 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 292 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MSVLERQEAI WMKWQEEQLH HPPPLPLQVR QLGHDFFNST DQLNVFSSPA QAHQHFHGFI 60 TNDHHFSGLL TPGILKQDPD VQTTTGCDNF TNIGGPSAGV GACELENITG FGMDYAVSRT 120 VSCPPAMAAA MADVAAAASK GRETTLPEKL SSSAGRESFK KRKADKTQNQ KEATEQEGKD 180 KRSRGCQKEE DSKVTEQKST SKNTATNNTI NREASETSKE NSKISEVQKP DYIHVRARRG 240 QATDSHSLAE RVRREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM 300 KLAAINPRLD FNIDNISTKE IFAVGTSELH TIGSTSEIIN PLNYPFDSIQ QVVSCCGLET 360 GADPSEMALR RTISAPVSIH ETLRESPYFS QIHPSTTWDA ELQSLYALEF QQGKSTSLLS 420 QPCTGYLGGS NVKMEI

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MSVLERQEAI WMKWQEEQLH HPPPLPLQVR QLGHDFFNST DQLNVFSSPA QAHQHFHGFI  60
TNDHHFSGLL TPGILKQDPD VQTTTGCDNF TNIGGPSAGV GACELENITG FGMDYAVSRT  120
VSCPPAMAAA MADVAAAASK GRETTLPEKL SSSAGRESFK KRKADKTQNQ KEATEQEGKD  180
KRSRGCQKEE DSKVTEQKST SKNTATNNTI NREASETSKE NSKISEVQKP DYIHVRARRG  240
QATDSHSLAE RVRREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM  300
KLAAINPRLD FNIDNISTKE IFAVGTSELH TIGSTSEIIN PLNYPFDSIQ QVVSCCGLET  360
GADPSEMALR RTISAPVSIH ETLRESPYFS QIHPSTTWDA ELQSLYALEF QQGKSTSLLS  420
QPCTGYLGGS NVKMEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-58	bHLH family protein