PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112156.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 337aa    MW: 37123.5 Da    PI: 7.3019
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18255288134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  XP_027112156.1 255 CSHCQVNKTPQWRTGPLGPKTLCNACGVRYKSGR 288
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDCMEAKALK SSLLSDIGGM KSSQQQGFVD DIWCVTGLNN VSCDDFSVDD LLDFSDKDFK  60
DGPLKEDEDF KDTLSLSSSQ HHHHHRNSNF SSFSETDDFG SLLAAELAVP AEEMENLEWL  120
SQFVDDSRSE VSLLCPAGSF KDNKGRLTEK WSEPAVHMIR VPCFPLHVPV KPRSKRSRPN  180
GRVWSGSPSL TTTESSSTSS SSYGSSALSP FILSNPVQDS EMLSSVEKPP AKKHKKKPAT  240
DTGSGSIGSQ TSRRCSHCQV NKTPQWRTGP LGPKTLCNAC GVRYKSGRLF PEYRPACSPT  300
FSQEVHSNSH RKVLEMRRKK EATGHVEAGL TPMVSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-51GATA family protein