PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111943.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 416aa MW: 46932.3 Da PI: 7.9442

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.8e-30	108	161	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk +l+lm++ gL+++hvkSHLQ+YR+ XP_027111943.1 108 PRLRWTPDLHLSFVHAIERLGGQERATPKLVLQLMNLRGLSIAHVKSHLQMYRS 161 8****************************************************7 PP
2	Myb_DNA-binding	45.8	1.4e-14	109	160	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +v+a+++lGg t+k++ + m+ g++ ++ks++q+y+ XP_027111943.1 109 RLRWTPDLHLSFVHAIERLGGQeraTPKLVLQLMNlRGLSIAHVKSHLQMYR 160 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MSTKSATTLA EEFNCEAMVE DSGVNAKLKS DRNEDDTAQT SPDSSLNISS IDLNEEASSN 60 VDEETSSEVP DLSLVDCEKS SEGNSENYCT SVERNEKKVR QYNRSKLPRL RWTPDLHLSF 120 VHAIERLGGQ ERATPKLVLQ LMNLRGLSIA HVKSHLQMYR SKKLDESGQV IGLAKRGMQG 180 KGPFSGRMDQ MCSPVDQFRY QNGAIVVASN PNGGNNIVNI LNNASLQSPY EAKSLSSRFQ 240 QWSYYQDSMM KSQGKSCNSS IFHAMHGATR YGPIRPSSFL EEKRWPPREF SSHHLKEKRV 300 DPTASKWANA PFQPLYNQFH QPENSAGATY FMQRANWNRR DSLTAERVET NGNNPANIVK 360 IESPYRHQMM NEHKILDGKE WLPDLQLSLS RSLGNYKDMA QNKGESDVNT RLSLSL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MSTKSATTLA EEFNCEAMVE DSGVNAKLKS DRNEDDTAQT SPDSSLNISS IDLNEEASSN  60
VDEETSSEVP DLSLVDCEKS SEGNSENYCT SVERNEKKVR QYNRSKLPRL RWTPDLHLSF  120
VHAIERLGGQ ERATPKLVLQ LMNLRGLSIA HVKSHLQMYR SKKLDESGQV IGLAKRGMQG  180
KGPFSGRMDQ MCSPVDQFRY QNGAIVVASN PNGGNNIVNI LNNASLQSPY EAKSLSSRFQ  240
QWSYYQDSMM KSQGKSCNSS IFHAMHGATR YGPIRPSSFL EEKRWPPREF SSHHLKEKRV  300
DPTASKWANA PFQPLYNQFH QPENSAGATY FMQRANWNRR DSLTAERVET NGNNPANIVK  360
IESPYRHQMM NEHKILDGKE WLPDLQLSLS RSLGNYKDMA QNKGESDVNT RLSLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-37	G2-like family protein