PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111906.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 267aa MW: 29180.2 Da PI: 8.675

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2.1e-13	79	126	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR+riN +++Lr l+P++ +K++Ka+ L k++ +k+Lq XP_027111906.1 79 KSHSEAERRRRERINAHLATLRGLVPPN-----EKMDKATLLAKVISQVKQLQ 126 58**********************98.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MSLYSEAPVK RSTIGEDCAR QFDQFPGDIG GIGGNLGSKS MSGSQSLVLD GERGELVKSC 60 GRVGKKGETS EAKTIAALKS HSEAERRRRE RINAHLATLR GLVPPNEKMD KATLLAKVIS 120 QVKQLQKTTT QISESFCIPL DSDEVRVEQL DEISVEGTFN FKASLCCDYR PGLLSDLKKA 180 IGSLPLTLMR SEISTLGGRL MNVLFFTSSR RGDIGSAEDR KQLVNSVHQA LSSILDKFAE 240 STDCLPQTMY SNKRQRVSYF VSSCSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	90	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-34	bHLH family protein