PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111825.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 719aa MW: 79471.2 Da PI: 6.8954

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.8	1.1e-24	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_027111825.1 136 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQQ-RPSQELVAKDLHGMEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGD 227 99**************************97433.45679********************************************3..378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_027111825.1 228 GELRLGIRRA 237 999*9986 PP
2	Auxin_resp	119.2	3.3e-39	261	342	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a++t+ vF+v+YnPra++seF+v++++++k++ +++s+GmRfkm+feted++err++G++vg+sd+dpvrW++S+Wr+L XP_027111825.1 261 VVNAVTTRRVFNVCYNPRAGSSEFIVPYQRFSKSVAHSISAGMRFKMRFETEDAAERRCTGLIVGISDADPVRWSGSRWRCL 342 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MCGLIDLNTV NNDDDGSGSE MTPSASESVC MELWHACAGP LISLPKKGSR VVYLPQGHLE 60 QLADQLSLSN IDLPPHIFCR VVDVKLHAEA TTDEVYAQVS LLPDYQMEHK WKEGEVEVET 120 EEDVEGAGKS LTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYEQQ RPSQELVAKD 180 LHGMEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGGDGEL RLGIRRAAQL 240 KSCSTFPTAS QQFNASSITS VVNAVTTRRV FNVCYNPRAG SSEFIVPYQR FSKSVAHSIS 300 AGMRFKMRFE TEDAAERRCT GLIVGISDAD PVRWSGSRWR CLLVRWDDME VSRHNRVSPW 360 EIEPSGIVSG HSSLVTLGTK RTRTGLLTTK SEHSVARDAT GISEYGDIRL QKVLQGQEIV 420 GLNNPYDGFD ASSQHPSEMK SFPNTKDSRI SVVPNQLKSL QGDSFASHEV SFVEPFQFNQ 480 VLQGQETILN QSYGRGPAVD IVLESSGSSI LNGVQVPGQG NRWSAIRGYP THVQPPNPSG 540 QLSSPSSVMM FHQASYPVSK VRDAPCGGNL EKLEACNRGL FDTSERYIRR ISACSPESSS 600 RREDVYGSSS GFLKDHRNLG YADTAFPNES SHRRGQTAVS MCKNSCRLFG FPLAEGKNGT 660 NEENQIQVKM PYDHDAAFVP ENDVQLHPKP SLVTKVTGNS CTKVSDLYNV RDMLLDIAL

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MCGLIDLNTV NNDDDGSGSE MTPSASESVC MELWHACAGP LISLPKKGSR VVYLPQGHLE  60
QLADQLSLSN IDLPPHIFCR VVDVKLHAEA TTDEVYAQVS LLPDYQMEHK WKEGEVEVET  120
EEDVEGAGKS LTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYEQQ RPSQELVAKD  180
LHGMEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGGDGEL RLGIRRAAQL  240
KSCSTFPTAS QQFNASSITS VVNAVTTRRV FNVCYNPRAG SSEFIVPYQR FSKSVAHSIS  300
AGMRFKMRFE TEDAAERRCT GLIVGISDAD PVRWSGSRWR CLLVRWDDME VSRHNRVSPW  360
EIEPSGIVSG HSSLVTLGTK RTRTGLLTTK SEHSVARDAT GISEYGDIRL QKVLQGQEIV  420
GLNNPYDGFD ASSQHPSEMK SFPNTKDSRI SVVPNQLKSL QGDSFASHEV SFVEPFQFNQ  480
VLQGQETILN QSYGRGPAVD IVLESSGSSI LNGVQVPGQG NRWSAIRGYP THVQPPNPSG  540
QLSSPSSVMM FHQASYPVSK VRDAPCGGNL EKLEACNRGL FDTSERYIRR ISACSPESSS  600
RREDVYGSSS GFLKDHRNLG YADTAFPNES SHRRGQTAVS MCKNSCRLFG FPLAEGKNGT  660
NEENQIQVKM PYDHDAAFVP ENDVQLHPKP SLVTKVTGNS CTKVSDLYNV RDMLLDIAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-166	ARF family protein