PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027111779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LSD
Protein Properties Length: 258aa    MW: 27644.8 Da    PI: 4.4516
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027111779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.12.2e-11169193125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+YP+G ++V+C++C+tV
  XP_027111779.1 169 CGSCRLLLAYPPGVKYVQCSCCQTV 193
                     ************************9 PP

2zf-LSD136.58.2e-12207231125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC +lL+YP+GApsVRC +C  V
  XP_027111779.1 207 CGGCAVLLMYPYGAPSVRCCSCRSV 231
                     **********************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGTEEKDLVK GGGGGGGEDD DDDDGPPPGF HCIATRIEEN LVKEEKDAEI NENEDDEDVD  60
GPPPGWSSIP PATFQPVHPS DVEMSDKQKE DENEEGPPPG WHSVPLASQS SEAVPADTQM  120
GNHEDRTKCI DEGSQPGQKS VPPLKLLPPT PPRPPPAVSS PSEKGQMVCG SCRLLLAYPP  180
GVKYVQCSCC QTVNLVLEDH QVGQVKCGGC AVLLMYPYGA PSVRCCSCRS VTEIGAHNRR  240
PPLSVQQARR PLSVNRVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-36LSD family protein