PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027111776.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 210aa    MW: 24870.2 Da    PI: 9.9436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027111776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.3e-32261302102
                     HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
    HSF_DNA-bind   2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                     Fl+k+y++le+e               ++++sw+++g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++         weF+h
  XP_027111776.1  26 FLSKTYDLLEEEeergrreaiergsWGQRVVSWTADGTGFVVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKTASKR---------WEFQH 111
                     99********7777788888887767799************************************************9988.........***** PP

                     SXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                     ++F+kg ++ll++i+rkk 
  XP_027111776.1 112 EKFQKGCRHLLSEIHRKKC 130
                     ****************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MARERRRPIV GQSSSSSSRI KSPAPFLSKT YDLLEEEEER GRREAIERGS WGQRVVSWTA  60
DGTGFVVWSP AEFSELMLPR YFKHNNFSSF IRQLNTYGFK KTASKRWEFQ HEKFQKGCRH  120
LLSEIHRKKC EPSAFPQYLK ASEESNNSPS STVEENNTTR LLLMQENKNL KKERMELQMQ  180
IAHFKTLELK LMECLSFYWD DHHNKVRRLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-37HSF family protein