PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111616.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 465aa MW: 50571.8 Da PI: 5.2627

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	1.9e-05	357	394	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L XP_027111616.1 357 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 394 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA 60 NSDGSIVIQD LQKPNQPESA SNLSIDSTLQ ILGIGLSSPS TTDWDRALMH GSSNGRSDQS 120 NYQPMLQEDH NSSMNYRQER GLDSCPADQI QKDWSSTLKN NFSTIVEEDS SINSFKSSGN 180 QPLNSITTTS QCTAATCAGV STSFPISSAS YGYSSTLLQT LFDTEVPQPQ QSLFGTRPMN 240 YPSTTSYQNE FSPSLPKFSP LPKLQNTNSL QLSTNPNFCN GSAAAFNDLR VNFFPSVQSQ 300 FPSSTFNEKP SLPSITTKVS NDGIRGLGSV AKKSSSEPAF KRPRIETPSP LPTFKVRKEK 360 LGDRITALQQ LVSPFGKTDT ASVLHEAIDY IKFLHDQVNV LSTPYLKNGS PIQRQQASDK 420 VKDQEGSKED LKSRGLCLVP ISSTFPVAAE TTTDFWTPTF GGTFR

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA  60
NSDGSIVIQD LQKPNQPESA SNLSIDSTLQ ILGIGLSSPS TTDWDRALMH GSSNGRSDQS  120
NYQPMLQEDH NSSMNYRQER GLDSCPADQI QKDWSSTLKN NFSTIVEEDS SINSFKSSGN  180
QPLNSITTTS QCTAATCAGV STSFPISSAS YGYSSTLLQT LFDTEVPQPQ QSLFGTRPMN  240
YPSTTSYQNE FSPSLPKFSP LPKLQNTNSL QLSTNPNFCN GSAAAFNDLR VNFFPSVQSQ  300
FPSSTFNEKP SLPSITTKVS NDGIRGLGSV AKKSSSEPAF KRPRIETPSP LPTFKVRKEK  360
LGDRITALQQ LVSPFGKTDT ASVLHEAIDY IKFLHDQVNV LSTPYLKNGS PIQRQQASDK  420
VKDQEGSKED LKSRGLCLVP ISSTFPVAAE TTTDFWTPTF GGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	4e-55	bHLH family protein